PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004567.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

ARF

Protein Properties

Length: 604aa MW: 67644.5 Da PI: 8.6808

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004567.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.7	1.1e-23	161	262	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae++ + +++ s++++ +d++g +W++++iyr++++r++lt+GW+ F + ++L +gD v+F Cse_sc004567.1_g010.1 161 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QHRPSQEIVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFINKKKLVSGDAVLF 247 99**************************952.4456779********************************************* PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 + +++ l+++v+r+ Cse_sc004567.1_g010.1 248 L--RGDDGVLRLGVRRA 262 *..34788889999986 PP
2	Auxin_resp	105.1	8.3e-35	287	368	1	82
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++++s++svF+v+YnPr + seF+v++++++k+l +++s+Gm f +++eted+serr++G+++g+sd+dp++Wp+SkW+sL Cse_sc004567.1_g010.1 287 VVNSISQRSVFNVYYNPRGGLSEFIVPYHQFRKSLANRFSPGMMFNIRLETEDASERRCTGIITGISDTDPINWPGSKWKSL 368 6899*****************************************************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence
MMCGLIDLNI INNDTNEVTT SLVLDSPTSS DSYASRSPDL LKMSKSGSLV VCSLELWHAC 60 AGPLISLPKK GNAVVYFPQG HLEQQQQQCF VDAQTMAAAH VPPHVFCRVI DVQLHAEAGS 120 DDVFAQVSLI PDSQVDKKCG ESVEENENGG IDEKPSTPHM FCKTLTASDT STHGGFSVPR 180 RAAEDCFPPL DYKQHRPSQE IVAKDLHGTE WKFRHIYRGQ PRRHLLTTGW SAFINKKKLV 240 SGDAVLFLRG DDGVLRLGVR RAAQMKTAPG FLSSHRQLLN DISFKDVVNS ISQRSVFNVY 300 YNPRGGLSEF IVPYHQFRKS LANRFSPGMM FNIRLETEDA SERRCTGIIT GISDTDPINW 360 PGSKWKSLMV KWDGAEVTRQ NRVSPWEIER CNSVSGPNNI LSPMAKRMRT DFQVPKDGAV 420 GRFDFGKSIR SQKVLQGQEI SGYNNRPSET TGLQNAMIFP LRCDLRNLIH IGYGETYRPS 480 EVLQGQEIFI KQQNYNNSFM HPSRFMHSPA SVLHFQNEIH QAPYSRPINI TNNLGKPNLS 540 RGSLGQRYSL NQQESFSSPL NDSKPTDIRP QESVLTCKSS CRLFGFVLTE GTTQHTSPYV 600 KKTS

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence

MMCGLIDLNI INNDTNEVTT SLVLDSPTSS DSYASRSPDL LKMSKSGSLV VCSLELWHAC  60
AGPLISLPKK GNAVVYFPQG HLEQQQQQCF VDAQTMAAAH VPPHVFCRVI DVQLHAEAGS  120
DDVFAQVSLI PDSQVDKKCG ESVEENENGG IDEKPSTPHM FCKTLTASDT STHGGFSVPR  180
RAAEDCFPPL DYKQHRPSQE IVAKDLHGTE WKFRHIYRGQ PRRHLLTTGW SAFINKKKLV  240
SGDAVLFLRG DDGVLRLGVR RAAQMKTAPG FLSSHRQLLN DISFKDVVNS ISQRSVFNVY  300
YNPRGGLSEF IVPYHQFRKS LANRFSPGMM FNIRLETEDA SERRCTGIIT GISDTDPINW  360
PGSKWKSLMV KWDGAEVTRQ NRVSPWEIER CNSVSGPNNI LSPMAKRMRT DFQVPKDGAV  420
GRFDFGKSIR SQKVLQGQEI SGYNNRPSET TGLQNAMIFP LRCDLRNLIH IGYGETYRPS  480
EVLQGQEIFI KQQNYNNSFM HPSRFMHSPA SVLHFQNEIH QAPYSRPINI TNNLGKPNLS  540
RGSLGQRYSL NQQESFSSPL NDSKPTDIRP QESVLTCKSS CRLFGFVLTE GTTQHTSPYV  600
KKTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	1e-162	ARF family protein