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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc004564.1_g030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | FAR1 | ||||||||
Protein Properties | Length: 835aa MW: 95672.6 Da PI: 8.8983 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 52 | 2.4e-16 | 126 | 219 | 3 | 90 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 Y +YA+++GF vrks +k+ ++g ++++ +vC++eg ++ + + ++k++r+++ + tgCka+++ ++ + k+++t +++ Cse_sc004564.1_g030.1 126 YMKYASKAGFVVRKSCQKRL-MSGIVKQKYLVCNREGCPKGIHVDtldlenSDKQKRSSNLHITGCKARVMFELIPgSRKYKLTVFDS 212 99************988887.8999*************99988888999888899999999***************9*********** PP FAR1 84 eHnHela 90 HnHel Cse_sc004564.1_g030.1 213 IHNHELE 219 *****96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence |
MDSIPNSSVS SNRSSSSKEI GATELSTTEF APENVVVSII ESATEDIVVS DDVSAKYTEE 60 IVAYEHGDES AAIKKLNALK TPESFSTHSN FDTPGGTVYY IPKVPVDVLL AKGNVFNSVD 120 ECISAYMKYA SKAGFVVRKS CQKRLMSGIV KQKYLVCNRE GCPKGIHVDT LDLENSDKQK 180 RSSNLHITGC KARVMFELIP GSRKYKLTVF DSIHNHELER KEYKHLSKTE RQLTYVEQLF 240 IVKVASVNIG ATRAHHLLTG LKGSYLLVHG TAVDFKNFFR SVNCYIGDSD AQMLIAKMEN 300 RKKHVPDFSF DYLVENAELS AIFWADEVSK YNYKEFCDVV SFDATYRTNK YKMMFVPFTA 360 IDNHRKCVTV AAGLLKNETA NSYIWLLKAF IKAFGKAPSI VVTDQDGAMR KAMEQEFSGS 420 KHRLCMWHIT QKLPGKICSK IYDHTDFKRK FNQIVWNMYI GPDEFDYQWG KLLDEFNLHN 480 HKWLTKMFRI RSCWIPAFFV DSPLCGLMRT TSRSESENSF FSHFTNSGST LMNFMNYFET 540 AMEKHRHIQE RLDHKSIDSV PILRTYLKIE RHASKVYTRP LFEMVQAELF AGTWFCQIDT 600 KSLAEGSEVS VIKEKKFVDE LMEKKKAKKK EKFKKKGDDN DKNKDREEPI NLFHKEDGLY 660 KNANVEMIPN QYILRRWTKN LIPAGLRNKR MNMYGEKNEI VENYANKATS IVDHCVHILS 720 KDETRLDAFI EKLKLLKLDV EVDCLNPPSK HKLDNLEELV GVPKPHVVAV KNPYGCKPKG 780 REKSRIKGGK EQAIDESSIN RDSCSMCRAI DGHNKRTCLN KYRVEDDLVQ SQATS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-67 | FAR1 family protein |