PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004497.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 363aa MW: 40910.2 Da PI: 7.9776

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004497.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.3	1.8e-13	16	86	1	47
TSSS-HHHHHHHHHHHHHTTTT.........................-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........................tWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd +l+++v+ + +W+ I++ ++ gRt++ +k++w++ Cse_sc004497.1_g020.1 16 KGSWTPEEDAKLIQLVETQALRwcnqlspnvqhrpftpheddiilraHWSVISKLLP-GRTDNAIKNHWNST 86 799****************************************************.*********986 PP
2	Myb_DNA-binding	53.6	5e-17	162	207	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd +l+++v+ G ++W+ I + ++ gR++k+c++rw + Cse_sc004497.1_g020.1 162 KGSWTPEEDAKLIQLVETQGARNWSVIGSSIP-GRSGKSCRLRWCNQ 207 799***************************.*********985 PP
3	Myb_DNA-binding	49.4	1e-15	216	258	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+++++a+ +G++ W+ I++ ++ gRt++ +k++w++ Cse_sc004497.1_g020.1 216 PFTPHEDDIILHAHFIHGNK-WSVISKLLP-GRTDNAIKNHWNST 258 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence
MTSSSSNDDV NLLKKKGSWT PEEDAKLIQL VETQALRWCN QLSPNVQHRP FTPHEDDIIL 60 RAHWSVISKL LPGRTDNAIK NHWNSTLRRR GLTLTRSSES ESTQFDDDNE GLGLKNKKRR 120 CVSVSIEDTC LVDVMKKMIA TEVRSYIDEL RANDGLSFGP KKGSWTPEED AKLIQLVETQ 180 GARNWSVIGS SIPGRSGKSC RLRWCNQLSP NVQHCPFTPH EDDIILHAHF IHGNKWSVIS 240 KLLPGRTDNA IKNHWNSTLR RRGLTLTRSS ESESTQSDDD EGMKNKRRRC VSVSDVSSCD 300 GMTVLTLLPP GDGEKKKGDD EVEIEDTCLV DVMRKMIAKE VRTYIDELRA KDGLSFGALK 360 AMT

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence

MTSSSSNDDV NLLKKKGSWT PEEDAKLIQL VETQALRWCN QLSPNVQHRP FTPHEDDIIL  60
RAHWSVISKL LPGRTDNAIK NHWNSTLRRR GLTLTRSSES ESTQFDDDNE GLGLKNKKRR  120
CVSVSIEDTC LVDVMKKMIA TEVRSYIDEL RANDGLSFGP KKGSWTPEED AKLIQLVETQ  180
GARNWSVIGS SIPGRSGKSC RLRWCNQLSP NVQHCPFTPH EDDIILHAHF IHGNKWSVIS  240
KLLPGRTDNA IKNHWNSTLR RRGLTLTRSS ESESTQSDDD EGMKNKRRRC VSVSDVSSCD  300
GMTVLTLLPP GDGEKKKGDD EVEIEDTCLV DVMRKMIAKE VRTYIDELRA KDGLSFGALK  360
AMT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	120	LKNKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	5e-41	MYB family protein