PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004467.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 781aa    MW: 86124.8 Da    PI: 6.0093
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004467.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.94.5e-24145246199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F
  Cse_sc004467.1_g060.1 145 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSVFVSQKNLTSGDAVLF 231
                            99****************************963.3445679*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++el+++ +r+
  Cse_sc004467.1_g060.1 232 L--RGEGGELRLGTRRA 246
                            *..44999999999986 PP
2Auxin_resp108.76e-36271352182
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                            +a+a+st+s+F+v+Y+Pr+s+++Fvv+++k++k++++ +svG Rfkm+f +++s+err+sG+v+gv d+dp++W+nSkWr+L
  Cse_sc004467.1_g060.1 271 VANAVSTNSTFDVFYSPRSSRADFVVPYAKYMKSVSSMISVGARFKMKFCMDESPERRFSGVVTGVGDMDPYKWSNSKWRCL 352
                            689******************************************************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    
MDFDLNHVHN VESCENENDS SLSTSSNSSN CSTNGSSIYM ELWHACAGPL TTLPNKGNVV  60
AYFPQGHLEQ IASHSSTHFS PIDVPSLGLA PQIFCKIVGV ELLANKENDE VYTKLTLLPL  120
PEGNLQEKEE EGEGVTPTRT TPQMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYKQQR  180
PSQELVAKDL HGVEWKFRHI YRGQPRRHLL TTGWSVFVSQ KNLTSGDAVL FLRGEGGELR  240
LGTRRATRPR NILPDTTMGN LHSYSDILAS VANAVSTNST FDVFYSPRSS RADFVVPYAK  300
YMKSVSSMIS VGARFKMKFC MDESPERRFS GVVTGVGDMD PYKWSNSKWR CLMVRWDEDI  360
GNDHQERISP WEIDLSGGSF PLLNIQSSPR FKKLRAGLHA TPSALPAAAR GGYVDFEESI  420
RSSKVLQGQE NVGPVSPLYG RDKMNNSMNF GVQPPMHPSV PTNGMMMMGR GTSFISELLR  480
NTHHQPLPAT PYSGFLGSDS NRFPKVLQGQ EICSLRSLTG KPDIGSWVPP RIDIGNSHNV  540
LNMYRTPENP GFYPLGSEGG RNFGFPNPDV YEARPNPGPV MPTNFMRFPI VQPNIGSGNM  600
RDNVAELQIP AEKTADKLSE PNSSSEKDDG ASDSIGSSCK LFGFALNEAP PLLDGKSLNK  660
RSCTKVHKQG NKVGRAIDLS KMSSYHDLFM ELEALFNMEG AFNNPDGAWR LLYTDEENDM  720
MVVGDDPWDE FARIATKIHI YTAEEVEKLM SSGVISDNTS CLEEAPATVD TAKSSSVGQP  780
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0ARF family protein