PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004339.1_g120.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family C3H
Protein Properties Length: 300aa    MW: 32911.4 Da    PI: 8.1397
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004339.1_g120.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.9e-10204230127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ++t++C+ +  +G+C+yG+rC FaHg+
  Cse_sc004339.1_g120.1 204 WRTRICMKWENSGHCQYGSRCYFAHGE 230
                            79***********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MDSFRDDGNV IHIIGGDDKP VSATGNEYDK ASGGTTSNLS YGGNANAANK SIAIQKLLFK  60
TKWCVESRSG TCQNATNCNF AHRSSELRSL QQNYDDFGLA NEHKYLLNTL RESFPQFGTY  120
IDRSLKHCKK FYSEEGCPLG DGCPYVHDLE SKYRERTAIV VSGGRSSSVK RDGRVTAALP  180
AWPQSAAPTS PVAEADATVK PPNWRTRICM KWENSGHCQY GSRCYFAHGE AELRRYGGAL  240
VNPRNQWFNA PNTVADTGSS VAVAGGAAQL QGAEQRSGQT TWKFPKKSNG IYGDWIDDIE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-44C3H family protein