PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc004318.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MYB | ||||||||
Protein Properties | Length: 296aa MW: 33918 Da PI: 8.3373 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.6 | 1.6e-14 | 55 | 102 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l ++++ G +W+ ++ g+ R++k+c++rw +yl Cse_sc004318.1_g040.1 55 KGAWSEDEDNRLRAYIERNGHYNWRELPKLAGLSRCGKSCRLRWKNYL 102 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.6e-17 | 108 | 152 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE++++v ++++lG++ W++Ia++++ gR+++++k++w+ + Cse_sc004318.1_g040.1 108 RGNYSKEEEDIIVSLHNKLGNK-WSKIAEKLP-GRSDNEIKNHWHAH 152 899*******************.*********.***********976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence |
MEPRSYLHIY SYIQSRNIKG LLVNIDIKKE IYRDRELEDN NMVMAPCFDK NGRKKGAWSE 60 DEDNRLRAYI ERNGHYNWRE LPKLAGLSRC GKSCRLRWKN YLCPDVKRGN YSKEEEDIIV 120 SLHNKLGNKW SKIAEKLPGR SDNEIKNHWH AHLKTRAQKD QRILTSKNEE NEGLQTDKTN 180 PRVSPAKNIN VKSEEKVVTE VPTKSSSQLP SISATSSSSF SGSHYATSTY VSPQSSCYIP 240 EGDFWTEPFV VDNNSIYSSD ISSSPLGLVN DFLFQTSCQE MFLNDTISLS SLVSYL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16490.1 | 2e-55 | MYB family protein |