PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004317.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 823aa MW: 91924.2 Da PI: 4.4428

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004317.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	36	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd+ l +av ++ g++Wk+Ia+++ Rt+ qc +rwqk+l Cse_sc004317.1_g020.1 36 KGQWTAEEDDMLHKAVGKFDGKHWKKIAQCFK-DRTDVQCLHRWQKVL 82 799**************************9.**********986 PP
2	Myb_DNA-binding	55.8	1.1e-17	88	134	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ l+ +v+++G W+tIa++++ gR +kqc++rw+++l Cse_sc004317.1_g020.1 88 KGPWTKKEDKDLILLVEKYGAQKWSTIAQHLP-GRIGKQCRERWHNHL 134 79****************************.***********97 PP
3	Myb_DNA-binding	44.9	2.7e-14	140	183	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT++E+ l++a+k +G++ W+ + ++ gRt++ +k++w++ Cse_sc004317.1_g020.1 140 KEAWTEDEEVTLIHAHKVYGNK-WAELTKFLP-GRTDNAIKNHWNS 183 579*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence
MEGDPPPPVS DGLRGRRIIR RDINGRTTGP TRRSSKGQWT AEEDDMLHKA VGKFDGKHWK 60 KIAQCFKDRT DVQCLHRWQK VLNPELVKGP WTKKEDKDLI LLVEKYGAQK WSTIAQHLPG 120 RIGKQCRERW HNHLNPAINK EAWTEDEEVT LIHAHKVYGN KWAELTKFLP GRTDNAIKNH 180 WNSSLRKKLD AYIDSGLLED FKGLPSVVTQ STPTTSSRTQ QCSEDADEIS ECSQASTFIR 240 CSQSNNDMGE EAMVAYTRDE EDQLADMSEA FVADDDKTQP AEDLQIENNP GSDLDEFSKF 300 IERNYSQDPP EPCTDRGQPS SGEFFDISSL DLSQDSEFME CVDFDYQKQV GTDRSNVGFD 360 MAAQTLTSEN ACPDVTPPTD GSSDPLLYQQ SYYSDLVPSQ LPFDTFNSES NEFNNHLFDG 420 LPHIYTNDSQ FFTNQEDNIG AQDQMDPVTD PLDFNNQEDN IGAQDQAGPI LDPLVLASSD 480 GFSSGQVNGT LQLDQENQTQ REFQSQQQET LPLSYEPPVF PSTGIQFLSC DLIQSGGDLL 540 QEYSPLGIRQ LLRTASVNCF SPCRLWDTPS RNDSPEAVLK SAAKTFTCTP SILKKRQRDL 600 LSPLSQNRNA KKHGHASFLY DENKDVQLQS LSQIGPISND KENLNPAADI EMAQKEDIST 660 TVNVQQPHGV LVEHASVENS GIFGETPLKN SLESPTAWKS PWSPFVPGPL DTEITIADVE 720 GYFPSPSERS YEALGLMKEL SEQTAPAYAN AREVLGDETP DSLLNKRLLQ KSESSRQDSN 780 ILSEKRALDF SDCVSPNKGE HNARPSSGVS YSSPSSYLLK GCR

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence

MEGDPPPPVS DGLRGRRIIR RDINGRTTGP TRRSSKGQWT AEEDDMLHKA VGKFDGKHWK  60
KIAQCFKDRT DVQCLHRWQK VLNPELVKGP WTKKEDKDLI LLVEKYGAQK WSTIAQHLPG  120
RIGKQCRERW HNHLNPAINK EAWTEDEEVT LIHAHKVYGN KWAELTKFLP GRTDNAIKNH  180
WNSSLRKKLD AYIDSGLLED FKGLPSVVTQ STPTTSSRTQ QCSEDADEIS ECSQASTFIR  240
CSQSNNDMGE EAMVAYTRDE EDQLADMSEA FVADDDKTQP AEDLQIENNP GSDLDEFSKF  300
IERNYSQDPP EPCTDRGQPS SGEFFDISSL DLSQDSEFME CVDFDYQKQV GTDRSNVGFD  360
MAAQTLTSEN ACPDVTPPTD GSSDPLLYQQ SYYSDLVPSQ LPFDTFNSES NEFNNHLFDG  420
LPHIYTNDSQ FFTNQEDNIG AQDQMDPVTD PLDFNNQEDN IGAQDQAGPI LDPLVLASSD  480
GFSSGQVNGT LQLDQENQTQ REFQSQQQET LPLSYEPPVF PSTGIQFLSC DLIQSGGDLL  540
QEYSPLGIRQ LLRTASVNCF SPCRLWDTPS RNDSPEAVLK SAAKTFTCTP SILKKRQRDL  600
LSPLSQNRNA KKHGHASFLY DENKDVQLQS LSQIGPISND KENLNPAADI EMAQKEDIST  660
TVNVQQPHGV LVEHASVENS GIFGETPLKN SLESPTAWKS PWSPFVPGPL DTEITIADVE  720
GYFPSPSERS YEALGLMKEL SEQTAPAYAN AREVLGDETP DSLLNKRLLQ KSESSRQDSN  780
ILSEKRALDF SDCVSPNKGE HNARPSSGVS YSSPSSYLLK GCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-118	MYB family protein