PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004297.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 542aa MW: 63188.1 Da PI: 6.7924

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004297.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	57.3	5.1e-18	94	200	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkk 70 ++Y eYA ++GFs+rks+sk++ +ge+t++ vC++ gk++++ k + +++r+++ + t+Cka+++ + Cse_sc004297.1_g020.1 94 DMYLEYALKAGFSIRKSTSKRN--KGEVTHQYIVCNRAGKPRKTIVKdtlaqssqtvdnhkdgsnKPRQKRNSNYSVTDCKACVRFRA 179 58*************99998..999***********9988889**********87777778888999******* PP FAR1 71 ek.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc004297.1_g020.1 180 IHgTSAFKLYEFVENHNHPLL 200 9****************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MDYTIGNYDQ EDINVQVVTP TQTQANVHIQ STINDEKVNC NEDFSSEYSD LDDSESDDEC 60 IPTPKGHKYW VPEVPADEKP SEGNVFDTFD EAYDMYLEYA LKAGFSIRKS TSKRNKGEVT 120 HQYIVCNRAG KPRKTIVKDT LAQSSQTVDN HKDGSNKPRQ KRNSNYSVTD CKACVRFRAI 180 HGTSAFKLYE FVENHNHPLL DENNTNFLKA RRKLDFSDKL FIHRASLSNL GPTKAHRLRV 240 TFMGSYQKVC GKPSDWKNIR RSVNKYIGPR DAQMLIDKMN DMKKHVPNFS FEYHNVDDVL 300 SRMFWADETM KCNYNKFDDV VSFDATYRTN MSRMIFVPFT GIDHNQKCVT FGDALISDET 360 IESYKWILTS FKKAYVKEPI MAVTDQDPAL RSAVEAVFPE AHHRLLWKTR RGKNERNHQQ 420 EYFSSLDDEE AWQLMDLSLL DFKGGDLAFK RNLKITQRQN YKHRSLGSKL VSEPNFLIMM 480 PPSDDIIYDH PPVFDEYGDE EWYSWMTDIG ITCDRTRLYK FLVLNHNYKW DLELVAKKMI 540 NI

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MDYTIGNYDQ EDINVQVVTP TQTQANVHIQ STINDEKVNC NEDFSSEYSD LDDSESDDEC  60
IPTPKGHKYW VPEVPADEKP SEGNVFDTFD EAYDMYLEYA LKAGFSIRKS TSKRNKGEVT  120
HQYIVCNRAG KPRKTIVKDT LAQSSQTVDN HKDGSNKPRQ KRNSNYSVTD CKACVRFRAI  180
HGTSAFKLYE FVENHNHPLL DENNTNFLKA RRKLDFSDKL FIHRASLSNL GPTKAHRLRV  240
TFMGSYQKVC GKPSDWKNIR RSVNKYIGPR DAQMLIDKMN DMKKHVPNFS FEYHNVDDVL  300
SRMFWADETM KCNYNKFDDV VSFDATYRTN MSRMIFVPFT GIDHNQKCVT FGDALISDET  360
IESYKWILTS FKKAYVKEPI MAVTDQDPAL RSAVEAVFPE AHHRLLWKTR RGKNERNHQQ  420
EYFSSLDDEE AWQLMDLSLL DFKGGDLAFK RNLKITQRQN YKHRSLGSKL VSEPNFLIMM  480
PPSDDIIYDH PPVFDEYGDE EWYSWMTDIG ITCDRTRLYK FLVLNHNYKW DLELVAKKMI  540
NI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-35	FAR1 family protein