PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004295.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 362aa MW: 41886.5 Da PI: 9.6562

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004295.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.6	3.5e-17	63	169	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..................tekerrtraetrtgCkaklkvkk 70 ++Y eYA ++ Fs+rks+sk++ +ge+t++ vC++ gk++++ k + +++r+ + t t+Cka+++ k Cse_sc004295.1_g030.1 63 DMYLEYALKARFSIRKSTSKRK--KGEVTHKYIVCNRAGKPQKTIVKdmlaqgsqtvdnqkdggnKPRHKRNFNYTVTDCKACVRFKD 148 58*************99988..999************99889***********987788889999********* PP FAR1 71 ek.dgkwevtkleleHnHela 90 + ++ +++++++++HnH+l Cse_sc004295.1_g030.1 149 IHgTSSFKLYEFVENHNHPLL 169 9****************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MDSTTGNYDQ EDTDVPYSDL DDSETDDECI PTPKGHKYWI PDVPADEKPS EGNVFDTFDE 60 AYDMYLEYAL KARFSIRKST SKRKKGEVTH KYIVCNRAGK PQKTIVKDML AQGSQTVDNQ 120 KDGGNKPRHK RNFNYTVTDC KACVRFKDIH GTSSFKLYEF VENHNHPLLD ENNTDLLKAR 180 RKLDSSDKLF IHRASLSNLG PTKAHRLRVA FMGGYQKVRG KPSHWKNFRR SVNKYIGPRD 240 AQILVDKMNE RKKHVPNFSF EYHTVDDVFS RMLWADETMK CNYNAFGDVV SFNATYRTNR 300 FVVKLIQIPN LRNFFISLYG MCTLNPPNLK RDGMLLLGNQ PLSVRNVRLL TNIYFVVGLK 360 NH

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MDSTTGNYDQ EDTDVPYSDL DDSETDDECI PTPKGHKYWI PDVPADEKPS EGNVFDTFDE  60
AYDMYLEYAL KARFSIRKST SKRKKGEVTH KYIVCNRAGK PQKTIVKDML AQGSQTVDNQ  120
KDGGNKPRHK RNFNYTVTDC KACVRFKDIH GTSSFKLYEF VENHNHPLLD ENNTDLLKAR  180
RKLDSSDKLF IHRASLSNLG PTKAHRLRVA FMGGYQKVRG KPSHWKNFRR SVNKYIGPRD  240
AQILVDKMNE RKKHVPNFSF EYHTVDDVFS RMLWADETMK CNYNAFGDVV SFNATYRTNR  300
FVVKLIQIPN LRNFFISLYG MCTLNPPNLK RDGMLLLGNQ PLSVRNVRLL TNIYFVVGLK  360
NH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	8e-20	FAR1 family protein