PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004288.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family Trihelix
Protein Properties Length: 432aa    MW: 49898.4 Da    PI: 5.8016
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004288.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.98.6e-2696184187
               trihelix   1 rWtkqevlaLiearremeerlrr...gklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                            rW++qe+laL+e+r+++++ +++   ++ k+plW+e+s+ m  e g++rs  +Ckek+enl k+ykk+keg+ ++  ++ +++++f+q
  Cse_sc004288.1_g020.1  96 RWPRQETLALLEIRSRLDSCFKEatsSNHKAPLWDEISRIMnDEYGYQRSGRKCKEKFENLYKYYKKTKEGKVGK--NDGKHYRFFRQ 181
                            8*********************8444589************8899****************************95..67778****** PP

               trihelix  85 lea 87 
                            lea
  Cse_sc004288.1_g020.1 182 LEA 184
                            *85 PP
2trihelix39.41.6e-12338413275
               trihelix   2 WtkqevlaLiearremeerlrrgklk..kplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 
                            W + e+  Li +r+++e +++++ ++  + lWeev+  ++  g++rs + Cke w+++  ++ k+k   +k  +e+
  Cse_sc004288.1_g020.1 338 WIEPEISSLIHIRTNKECKFQDADQEngERLWEEVAFELSLLGYNRSENDCKEAWDKICVDFNKTKIDCEKTGKEV 413
                            *********************865543489**********************************996655543444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    
MDHGRYGQPA FTSGNNLPLH FHPPIPSLVS EVPFYLHQVQ NPNAQPSHPF HDTTNVSPPP  60
PPPSYSPQTG WNNGLTSGGI NLNHGTSNYV QSTTIRWPRQ ETLALLEIRS RLDSCFKEAT  120
SSNHKAPLWD EISRIMNDEY GYQRSGRKCK EKFENLYKYY KKTKEGKVGK NDGKHYRFFR  180
QLEALFGDQN DIRGNDTNMV VNPSSQSNYS CESNDDDQFE KKELIDAIEE SIESHVMKLM  240
VKQEEWGEKI LSMIERKEQE RVLIEEEWRK QEGARLDNEY EAWASHVARI ETRDKSVLDA  300
LQNLVRVRSI GSSNRSTEPE VNLKENGSLG DQEKCKNWIE PEISSLIHIR TNKECKFQDA  360
DQENGERLWE EVAFELSLLG YNRSENDCKE AWDKICVDFN KTKIDCEKTG KEVSSRRSNT  420
MNISGEHSWK TM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.15e-69Trihelix family protein