PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004265.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 545aa    MW: 61237.6 Da    PI: 6.5448
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004265.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS166.71.8e-51263490131368
                   GRAS 131 aLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL..rvkpgEalaVnlvlqlhrllde 216
                            +La R++g  sl+iT+++sp ++++ el  t+e+L +fA+e++v f+f+++  + + +   ++L  +v+ +Ea+aVnl +  h l ++
  Cse_sc004265.1_g060.1 263 ELALRSNGVSSLKITAFASPLTHDQLELGLTRENLIHFANEINVGFDFEIVNID-VLAGASWSLpfSVSDKEAIAVNLPI--HVLSNH 347
                            69************************************************7444.444457777447777********99..777766 PP

                   GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                            ++++++    vL++vk+l+Pk+vv v++ +d+++ ++ +++++al+ ys l++sl+a   ++ +  +k+Er+l++++i+++v  +   
  Cse_sc004265.1_g060.1 348 QTQIPN----VLRFVKNLNPKIVVSVDRGCDRTDLPYSNHLIHALQSYSNLLESLDAV-NANLDSLQKIERFLVQPAIEKIVLGRFLY 430
                            777777....*********************************************887.46669999***************987776 PP

                   GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                                 e+ ++Wr+ + +aGF+p+ +s+++++qa++l++++++++++ve+++  lvl+W++ +L+
  Cse_sc004265.1_g060.1 431 ----PEKTQHWRSLFLSAGFSPLMFSNFTESQAECLVKRTPVREFHVEKRQSLLVLCWQHDTLL 490
                            ....9*************************************9****************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MPLPFEFEGK GEEVLLSQED FHFHNNLVGV PYANPLVHFQ NSLLVSKKRK FSYTKEPTSV  60
LDNITTSPSP TSTSTLSSSH GGADTVAPVF PPPPDDQDQA MLRWIMGDVE DPSIGFNKML  120
TSGTVTGAPP DFDFSGGFGV VDQGFMTHHH QNQMFSPLSA AETHLVSPFD IKPNVQFNVQ  180
QQQQRYTSGN VEYNPLMHKN TFLDVKKMVQ QQQQPVVISH LQQQQQGIID ELYKASDLIQ  240
NGNNPILAQG ILARLNHQIS PIELALRSNG VSSLKITAFA SPLTHDQLEL GLTRENLIHF  300
ANEINVGFDF EIVNIDVLAG ASWSLPFSVS DKEAIAVNLP IHVLSNHQTQ IPNVLRFVKN  360
LNPKIVVSVD RGCDRTDLPY SNHLIHALQS YSNLLESLDA VNANLDSLQK IERFLVQPAI  420
EKIVLGRFLY PEKTQHWRSL FLSAGFSPLM FSNFTESQAE CLVKRTPVRE FHVEKRQSLL  480
VLCWQHDTLL GLRVYECHHP QKHKKTDLVT FRLKLIELSR SNWLDQLETR ASCRGLTVGG  540
LDYVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.16e-83GRAS family protein