PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004191.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 280aa    MW: 32043.7 Da    PI: 9.69
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004191.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.12.7e-141151343
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                           i+ +  r +t+ kR+ gi+KKA+E  +LCd++ a+ii+ ++
  Cse_sc004191.1_g030.1 11 IKKEKTRITTYQKRKLGIIKKASEFTILCDVDTAMIIYPPN 51
                           788899*******************************9776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGRAKLRIEL IKKEKTRITT YQKRKLGIIK KASEFTILCD VDTAMIIYPP NSNEPEVWPE  60
IPDQIKKSIA SYKSKKGETG KRTYNLNDFF KDRKRKIEDE LMKARRKNIE AKYSTWFDEL  120
DGFPEHYLRK FVHVKLEPKE KQVRTDLELK KRNMNILYPH TLSFGNNPSM FHYPGLGLGL  180
GLGLGLGLGL GNPNPRQVMN NWPSNDVPST SYMLMNREPI APYGYQLVDS GGTRGFLYDN  240
NLNQCFSIQP PPSVQGGTLQ EFAMQERLES NSDGSGVCDQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.19e-19M-type_MADS family protein