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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc004189.1_g020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 259aa MW: 29648.4 Da PI: 8.183 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.7 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Cse_sc004189.1_g020.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 75.6 | 1.3e-25 | 80 | 179 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRh.....llGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 ++ ++ ++s+++e+ kLk+++e+Lq+ qR+ l GedL++L+lkeL+qLe+qL++ l++iRs +++ +l+ +++lq ke++ Cse_sc004189.1_g020.1 80 VSRSANDAEQSSYKEYMKLKAKYESLQQYQRQvscvqLFGEDLGPLNLKELEQLERQLDSTLRQIRSIRTQSMLDRLSDLQVKERMWL 167 45566777899****************999963333379************************************************* PP K-box 89 eenkaLrkklee 100 e+nkaL++klee Cse_sc004189.1_g020.1 168 EANKALQNKLEE 179 *********987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCST 60 SNMLKMLERY QNCTYSSMEV SRSANDAEQS SYKEYMKLKA KYESLQQYQR QVSCVQLFGE 120 DLGPLNLKEL EQLERQLDST LRQIRSIRTQ SMLDRLSDLQ VKERMWLEAN KALQNKLEEY 180 YAENQAGPSW AGGGGENGNN TYGQHHQQHQ EQHPEPQGFF QPLDCNSNLQ IGYNTIGSSQ 240 IAASTSGQNV NGIVPGWML |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 1e-100 | MIKC_MADS family protein |