PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004176.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 413aa MW: 48001.8 Da PI: 6.3882

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004176.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	22	5.3e-07	176	221	1	47
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 ++Y eY+++ F++rks+ k++ +++eit+r C++ gkr+++ + Cse_sc004176.1_g090.1 176 DMYLEYSQKGRFNIRKSNVKRN-NKREITHRSILCNRAGKRRSKVEV 221 58*************99998.7777************998765 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MVEITEQGSI QLGEGSSSRD LQVENTTIID QANLEEHSDQ SDFDIYEADP EFVPTPKGTP 60 YWAPDIPKDE KPKRGVMFDT FDLAYDTYLE YSQKGRFNIR KSNVKRNNKR EITHRSILCN 120 RAGKRRSKVE VNIDIYEADP EFVPTPKGTP YWAPDIPEDE KPKRGVMFDT FDLAYDMYLE 180 YSQKGRFNIR KSNVKRNNKR EITHRSILCN RAGKRRSKVE VNTLKEGEDE EEAAYKVIDF 240 VENHNHPLMN ENNMDLSRAQ RQLQFGDYVF IHRASLSNVG PTKAHRLKVA LMGGYDKVRG 300 TPMDWRNFRR AVNSFVGDRD AQMLVDKMIN RKNHVPEFSF EYHTDTEGEL VSFFWADETM 360 KCNYVAFGDV VSFDATFRTN KYHFVLVPFI GIDHHKKCVT FGDALLCDET YES

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MVEITEQGSI QLGEGSSSRD LQVENTTIID QANLEEHSDQ SDFDIYEADP EFVPTPKGTP  60
YWAPDIPKDE KPKRGVMFDT FDLAYDTYLE YSQKGRFNIR KSNVKRNNKR EITHRSILCN  120
RAGKRRSKVE VNIDIYEADP EFVPTPKGTP YWAPDIPEDE KPKRGVMFDT FDLAYDMYLE  180
YSQKGRFNIR KSNVKRNNKR EITHRSILCN RAGKRRSKVE VNTLKEGEDE EEAAYKVIDF  240
VENHNHPLMN ENNMDLSRAQ RQLQFGDYVF IHRASLSNVG PTKAHRLKVA LMGGYDKVRG  300
TPMDWRNFRR AVNSFVGDRD AQMLVDKMIN RKNHVPEFSF EYHTDTEGEL VSFFWADETM  360
KCNYVAFGDV VSFDATFRTN KYHFVLVPFI GIDHHKKCVT FGDALLCDET YES

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	VKRNNKR
2	194	200	VKRNNKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-24	FAR1 family protein