PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004062.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

CO-like

Protein Properties

Length: 387aa MW: 42606.5 Da PI: 6.401

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004062.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	21.5	4.8e-07	17	58	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37 +r+C+++ + + +++C+ + +lC C +H H Cse_sc004062.1_g060.1 17 ARVCDTCRSAPCTIYCRPDAAYLCTACDARIHAAnklqssqH 58 589*****************************6555555566 PP
2	zf-B_box	28.9	2.4e-09	61	105	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ ++ + C+ + lC +C +H H +vp Cse_sc004062.1_g060.1 61 VWVCEACEQAPAAFICKADAASLCVTCDADIHAAnplarrHHRVP 105 689*****************************6678888877766 PP
3	CCT	66.9	5.5e-23	318	361	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Re ++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++ Cse_sc004062.1_g060.1 318 REVRVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 361 899***************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MLDHSSALCL KTSTTFARVC DTCRSAPCTI YCRPDAAYLC TACDARIHAA NKLQSSQHER 60 VWVCEACEQA PAAFICKADA ASLCVTCDAD IHAANPLARR HHRVPVMPIP GAMYGPRPND 120 PRSVIGLGVD SHSGFLSGTE QGDDTIDDED ESEAASWLLF DGPAPKNSQN GNTKLESGFL 180 FNGEGGEDEY LEFMEFGGDD QQQCFNKGSE KMYSSANGEA DSVVPVQKNH HQIHHHEVHN 240 QKFQLGMEYE SSNGGASGGY GYPVLTHSVS MSSMEVGVVP DSTRTEHSLS TPRPSKGTID 300 LFSNPQVQVA TQLSPMDREV RVLRYREKKK TRKFEKTIRY ASRKAYAETR PRIKGRFAKR 360 TNGDVDVDQM FPTNHMVEGG YGIVPSF

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MLDHSSALCL KTSTTFARVC DTCRSAPCTI YCRPDAAYLC TACDARIHAA NKLQSSQHER  60
VWVCEACEQA PAAFICKADA ASLCVTCDAD IHAANPLARR HHRVPVMPIP GAMYGPRPND  120
PRSVIGLGVD SHSGFLSGTE QGDDTIDDED ESEAASWLLF DGPAPKNSQN GNTKLESGFL  180
FNGEGGEDEY LEFMEFGGDD QQQCFNKGSE KMYSSANGEA DSVVPVQKNH HQIHHHEVHN  240
QKFQLGMEYE SSNGGASGGY GYPVLTHSVS MSSMEVGVVP DSTRTEHSLS TPRPSKGTID  300
LFSNPQVQVA TQLSPMDREV RVLRYREKKK TRKFEKTIRY ASRKAYAETR PRIKGRFAKR  360
TNGDVDVDQM FPTNHMVEGG YGIVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02380.1	6e-94	CO-like family protein