PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004055.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 280aa    MW: 32407.1 Da    PI: 9.7516
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004055.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.14.6e-131350542
                           SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            +  r+ t+ kR+ gilKKA+E  +LCd++  +ii  +
  Cse_sc004055.1_g030.1 13 KEKTRSATYQKRKLGILKKASEFTILCDVDTIMIITPP 50
                           56789*************************99999765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    
MGRAKLRMEL IPKEKTRSAT YQKRKLGILK KASEFTILCD VDTIMIITPP NSNEPEVWPE  60
NNPEQMKKGI ASYKSKKGET GKKTYNLNDF FVDRKRKIED ELMKARKKNM EAKYATWFDA  120
LNNLPEHQLR QFVAMLEPKE TDAKTRLEFK KRSMNINYPY MLNFGNKPTM FHFPGLGLGN  180
PNPELDHVQL MNPRHVMNHW FSNEAPSTSY MPVNREPMAS YCYQGLVYDN NLNTFLSFQR  240
PHLVQGGVLS EFVPQELESQ VNNNGGAGDN VIDNHRGRIM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58890.11e-12M-type_MADS family protein