PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc004019.1_g090.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 388aa MW: 43659.8 Da PI: 9.3703

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc004019.1_g090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.2	3e-13	211	257	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR+++ ++f L +llP + kK++Ka++Le A +YI++Lq Cse_sc004019.1_g090.1 211 DHVLAERKRREKLAQRFVSLSSLLPDL-----KKMDKATVLEDAANYIQELQ 257 6889*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
MPTLSMLRGR QNLCFRHSGQ LRYMPTISAR FSMSHIKNHQ KIPNWACYPI FAINLQEGFK 60 LEYGRMVYGY SKWLLAREMQ DQGFINQFQM NKAYHPLMDD FSVDSFSSES YTENPSFIDQ 120 SFQTRTGVEE QAGIKRPSSY KRANSINKKF TSIDQKPKPK LVSDPPNTFT ISFGDIKPKD 180 EILSFGDAYG FTGAGSKKVP AMSRNPIQVQ DHVLAERKRR EKLAQRFVSL SSLLPDLKKM 240 DKATVLEDAA NYIQELQGRV KELEGLSGLK RNNMQESVIS AKRSRLSCSD NDGSSSNETN 300 FAESSSPSTP EIEIRTSGCS LLIEIYSRKN CISLVKVLSE MQTLGLSVIS SSTMPFADTS 360 LLITVVAQKS DDFIMSSTDL VKHLQLAI

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

MPTLSMLRGR QNLCFRHSGQ LRYMPTISAR FSMSHIKNHQ KIPNWACYPI FAINLQEGFK  60
LEYGRMVYGY SKWLLAREMQ DQGFINQFQM NKAYHPLMDD FSVDSFSSES YTENPSFIDQ  120
SFQTRTGVEE QAGIKRPSSY KRANSINKKF TSIDQKPKPK LVSDPPNTFT ISFGDIKPKD  180
EILSFGDAYG FTGAGSKKVP AMSRNPIQVQ DHVLAERKRR EKLAQRFVSL SSLLPDLKKM  240
DKATVLEDAA NYIQELQGRV KELEGLSGLK RNNMQESVIS AKRSRLSCSD NDGSSSNETN  300
FAESSSPSTP EIEIRTSGCS LLIEIYSRKN CISLVKVLSE MQTLGLSVIS SSTMPFADTS  360
LLITVVAQKS DDFIMSSTDL VKHLQLAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	216	221	ERKRRE
2	217	222	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	7e-37	bHLH family protein