PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc004010.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YC
Protein Properties Length: 275aa    MW: 30838.8 Da    PI: 5.0497
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc004010.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC1794.4e-56761791101
                  NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 
                            ql++fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+tr
  Cse_sc004010.1_g040.1  76 QLQNFWANQyqeIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITR 163
                            89******9999**************************************************************************** PP

                  NF-YC  86 tdifdflvdivprdel 101
                            tdifdflvdivpr++l
  Cse_sc004010.1_g040.1 164 TDIFDFLVDIVPREDL 179
                            *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    
MDQQDQGQSQ NMGTAGSSAQ MQYGVSPYPQ NQMMGSGPPG QTQQSVGLPS PPGQLAQQQL  60
AYQHIHQQQQ QQLHQQLQNF WANQYQEIEQ TTDFKNHSLP LARIKKIMKA DEDVRMISAE  120
APVIFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA ITRTDIFDFL VDIVPREDLK  180
DEVLASTMPR GGPLPVGGPT EGLPYYYMPP PQVGGSGMYM GKPVDPQALY GQQPNPYMAQ  240
PLWPQQQQQE PQEALGNVTI GMYQATKDHT MVVIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149155RRTLQKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08970.31e-80NF-YC family protein