PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc003930.1_g070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | HB-PHD | ||||||||
Protein Properties | Length: 726aa MW: 80175.9 Da PI: 4.5728 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 36.2 | 1e-11 | 533 | 576 | 9 | 52 |
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +++L+e+F++n+yp++e++e+L ++l++t qV+ WF R Cse_sc003930.1_g070.1 533 EAVTQRLQEVFKENQYPDKEAKEKLVQELKITHHQVTKWFGHAR 576 56789***********************************9887 PP | |||||||
2 | PHD | 39.7 | 1.1e-13 | 201 | 256 | 1 | 51 |
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C + +++++lCdg C++ fH+ Cl+++l +e++p g wlC+ C++k Cse_sc003930.1_g070.1 201 FCSKCAQsdVRLDNDIILCDGaCDRGFHQFCLDPPLLKEQVPPGdeGWLCPACDCK 256 699****54444********66********************9999*******985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence |
MNSERVCNEN GQKSHENGEI HKSSEVLCGT PIREATQENQ ANGSSQPDKR SKGRPSKTKQ 60 TFTGTPRVLR SRSQEKPKIP EPVEAPSQDA DSKEKKKRKK KNINKDEKDE FSKIKTHLRY 120 LIKRMDYEQN FIDAYVGEGW KGQSLEKLRP EKELERAKSD INRYKLKIRD LFKQIDTSLE 180 EGRFPETLYD SDGLIDSEDI FCSKCAQSDV RLDNDIILCD GACDRGFHQF CLDPPLLKEQ 240 VPPGDEGWLC PACDCKVDCV DLINETQGTD LSVNDSWEMV FPESVASGNT LDDSLGLPSD 300 DSEDDDFNPD APEVEDDGEG DGEGEEEGDG DESSSDESDF SSASEDLGAV ANNDPLLALP 360 SDDSEDDDFN PDKADSGSDG EAKTKSSGSD DDDFTSDSDD LRDICKNEGT LDEVQGHAMF 420 ENDEETKTDM EDDDSGPITA KRQVERLDYK KLHDEAYGNT SSDSSDEDFS DTEAPSNPKN 480 RKPTKGTGST KKQKPSESTP ITKNGKKPDA EGSSADRSSA KTGTKSAHRR LGEAVTQRLQ 540 EVFKENQYPD KEAKEKLVQE LKITHHQVTK WFGHARWNLN HPGKRTKAGT STPEPNTNTT 600 TKPATTTTTT TTQEISMTNQ ANVANSTTPK STTTTTTPRE ISMTDKANVA NSTTPKSTTT 660 TTTTREISMT DQANVANSTT PKSRKRKTKA DSQNDNEITP NLKEASPTVP PNQSVRRSGR 720 VQAKRS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 101 | KKKRKKK |
2 | 96 | 100 | KKRKK |
3 | 683 | 688 | SRKRKT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19510.1 | 5e-71 | HB-PHD family protein |