PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003874.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 416aa MW: 49308.5 Da PI: 9.6171

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003874.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	33	2e-10	39	117	7	90
FAR1 7 AkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 A+ +GF ++k+++k++ ng++++ +++C+k+g e + ++ +r++++++ +C +l+ k + + +w + HnHel Cse_sc003874.1_g060.1 39 ASGLGFVIVKKRTKSE--NGQMMEINYMCTKSGIYEYHGSE----KRKNKTKKSNCPFRLVSKYRPtRYNWILRVKCDSHNHELL 117 77899999987666..999***********98877....99999***********9888898888889***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MALAKAFRFH EEVSEDCPFV RQEAFRSHEE VTEWVQNIAS GLGFVIVKKR TKSENGQMME 60 INYMCTKSGI YEYHGSEKRK NKTKKSNCPF RLVSKYRPTR YNWILRVKCD SHNHELLESL 120 HGVPYAMRLK DYELSLVKEL SEYSVRPRNI LSTIKGRNSD NVSSVRTIYN ALDKFRRARV 180 GDRTQIQVLY SHLTDSGYAY YPRVNEHNEL EELFFVHPTL NALWRTFPEI MLMDSTYNTT 240 MFRLPLLEIV GVTPTNKTFS MAYSFIHGEK GHNFQWVLQR VKEVIDERYH PRVIVTDRDL 300 ALVGACRAEF PTAHKLLCRW HIEQNLLNFM RNRCGGIDEY DSIKRRWDRL VKAPTSRLFE 360 QQYERLKQRL VNHAPIAEYL DNWLRDYRHM FVSYIPMNIA PSARQQRVEL TLTTRC

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MALAKAFRFH EEVSEDCPFV RQEAFRSHEE VTEWVQNIAS GLGFVIVKKR TKSENGQMME  60
INYMCTKSGI YEYHGSEKRK NKTKKSNCPF RLVSKYRPTR YNWILRVKCD SHNHELLESL  120
HGVPYAMRLK DYELSLVKEL SEYSVRPRNI LSTIKGRNSD NVSSVRTIYN ALDKFRRARV  180
GDRTQIQVLY SHLTDSGYAY YPRVNEHNEL EELFFVHPTL NALWRTFPEI MLMDSTYNTT  240
MFRLPLLEIV GVTPTNKTFS MAYSFIHGEK GHNFQWVLQR VKEVIDERYH PRVIVTDRDL  300
ALVGACRAEF PTAHKLLCRW HIEQNLLNFM RNRCGGIDEY DSIKRRWDRL VKAPTSRLFE  360
QQYERLKQRL VNHAPIAEYL DNWLRDYRHM FVSYIPMNIA PSARQQRVEL TLTTRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-17	FAR1 family protein