PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003827.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 819aa    MW: 90714.3 Da    PI: 6.118
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003827.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.4e-24127228199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  Cse_sc003827.1_g060.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfaQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 212
                            99*****************************8554444..48********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  Cse_sc003827.1_g060.1 213 FI--WNEKNQLLLGIRRA 228
                            **..8899999****997 PP
2Auxin_resp115.93.4e-38253336183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaa+t+s F+++YnPra++seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dld+ rWpnS+Wrs+k
  Cse_sc003827.1_g060.1 253 AAHAAATNSRFTIFYNPRACPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDQARWPNSHWRSVK 336
                            79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    
MKLSAVGFGQ QLPEGEKRCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAASTNKE  60
VDAHTPNYPS LHPQLICQLH NVTMHADVET DEVYAQMTLQ PLNSEEQKEA FLPADLGAGS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFAQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ACPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDQARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSQFP LRLKRPWPPG LPSFNGMRED ELGMNSPLMW VPGDRGIQSL NFQGIGASPW  420
MQPRLDAGML GMQTNVYQAM AAAALQEMRS MDSSKTSNTS LLQFQQPQMP TQMLHQSQPQ  480
PTFVPDNMTQ LQNPNPFSNQ QQTLLPPMQQ NQTFSDSNGN NPVSLLGSFS QEETSHLLNM  540
PRSTSMLTST GWPAKRVAVD PLLMSGGSQS LLHQVEQLGP PSHTSLSQNN NLSQNAVSLP  600
PFPGRECSIE QEQNNDPQSN NLLFGVNIEN SNLLMQSGIS GVGFPGGNGF SMNPIMTPPS  660
CIDESGFLQS PDNAGQTGQT NPPNRTFVKV YKSGSFGRSL DIGKFSSYHE LRGELAQMFG  720
LEGQLEDPLR SGWQLVFVDR ENDVLLLGDD PWPEFVSSVY CIKILSPQEM QEMGKQGLEL  780
LNSVPIQKPS DSGYENYAPT RQESMNLSNG VASVGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein