PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003801.1_g020.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 285aa    MW: 31478.7 Da    PI: 5.1474
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003801.1_g020.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.4e-08955345
                           SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHH CS
        Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwq 45
                            WT e d  + +a+  +  +    +W++Ia++++  ++++++k+++ 
  Cse_sc003801.1_g020.1  9 VWTREQDVAFEEAIVTYSDEddeeRWEKIAAEVPGEKSAEEIKNHYE 55
                           7*****************99**************899********96 PP
2Myb_DNA-binding27.19.9e-09162200947
                            HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            d l++ + +++G+g+W++I+r    +Rt+ q+ s+ qky
  Cse_sc003801.1_g020.1 162 DRLFLLGLEKYGKGDWRSISRNYVVTRTPTQVASHAQKY 200
                            5789999*******************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    
MVEETKESVW TREQDVAFEE AIVTYSDEDD EERWEKIAAE VPGEKSAEEI KNHYELLVED  60
VERIESGVVP LPEYSSSMDD SESHAGEGGT GKKRGQNGSE PNHGKASKSE QERRKGIAWT  120
EEEHSALVEA LVPLDICREG GCGNGGQIRL QNSALYVLNR PDRLFLLGLE KYGKGDWRSI  180
SRNYVVTRTP TQVASHAQKY FIRLNSINNK DRRRSSIHDI TSVNNGDVSV PQPPTNDSSG  240
KSTKQQPIYG GQPVVGTPVN LAPGYSVGTP VGVPPNIDPR GSRHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-87MYB family protein