PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003747.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 878aa MW: 99750 Da PI: 8.5788

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003747.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.1	9.5e-06	222	243	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+ff++ G C++ d C+F+H+ Cse_sc003747.1_g010.1 222 RVACKFFLA-GNCNR-DDCRFSHD 243 678****.*.*****7 PP

Sequence ? help Back to Top
Protein Sequence Length: 878 aa Download sequence
MSGRRRRSEA SWERKDEKWS NLETNYDMPP GNFSGRQSWE CLQVNRNVSE DGDVSRDRHR 60 MQTDPAFDDW EKQYSSRPSD DTYNMPYRAR DRVTGGNARM SRDRARTRSP NRSSRSPGRG 120 GARDMSRSRS RSRNRDWETT RAQSRSPLYD DRRHESNEYP SIRNNSRLSS RSDGKQLDDN 180 LRENRSRRPD HTSGSRYNDY QRDNRNVYDD QNKRHQMNRN SRVACKFFLA GNCNRDDCRF 240 SHDVPESGHH DGRSHDNTRD HNLRKNKEWH GRHPHDDVLN PSDFSDIPKS NFADKKQKTW 300 DAPTWDDMES GGFDRKSRDN IQGHKSDDKR NLWDRPSRDA SGFPDVGKSN FNSDNKSRSG 360 NGSARDNKKS WNDANSDDKK KLWARPLWDD VDAAPGFPDV NKPKPSSDYK NSPGNIPSLD 420 SKNYEDGKKS WNDANSDDKK KLWDMPLWDD VDEAPGFPDV NKPKPSSDYK SRPGNIPSWD 480 SKNHVDGKKS WNSVQSGNNI DGITKKWDGP LWDEVDFGKA SGADGTSSAT DDKIRKFDGP 540 GFNDMASKKN EYILPQWTTA TKGTDLESHA MDGQTQHVMS QPLSSQYVNA TVAMIPEVPI 600 GSSHLKHQIQ EHSNQQMLTS GNDSIQNVHD IYLTGTRNPF SGSNIQSNGQ VQGTFVHMDS 660 HKQTENGQAR SKNDVNALPA SLPELSLQGQ LPQLYTDLNL TGAIDFLKSL PKSACNEDTR 720 VNEEQNTATA MDVKASVPIG ILSGSITQEK EPVGNLEGTG NKVVENDKQQ EETMNLHNTE 780 TQGKEEEGDV GNEEKAMRQF KVALVEFAKE ILKPKWKEGK LSRDVHKTVV KKVVDKVTST 840 IQGNQIPRTQ AKIEQYLTYS KPKITKLVEA YVERLLKA

Sequence ? help Back to Top

Protein Sequence Length: 878 aa Download sequence

MSGRRRRSEA SWERKDEKWS NLETNYDMPP GNFSGRQSWE CLQVNRNVSE DGDVSRDRHR  60
MQTDPAFDDW EKQYSSRPSD DTYNMPYRAR DRVTGGNARM SRDRARTRSP NRSSRSPGRG  120
GARDMSRSRS RSRNRDWETT RAQSRSPLYD DRRHESNEYP SIRNNSRLSS RSDGKQLDDN  180
LRENRSRRPD HTSGSRYNDY QRDNRNVYDD QNKRHQMNRN SRVACKFFLA GNCNRDDCRF  240
SHDVPESGHH DGRSHDNTRD HNLRKNKEWH GRHPHDDVLN PSDFSDIPKS NFADKKQKTW  300
DAPTWDDMES GGFDRKSRDN IQGHKSDDKR NLWDRPSRDA SGFPDVGKSN FNSDNKSRSG  360
NGSARDNKKS WNDANSDDKK KLWARPLWDD VDAAPGFPDV NKPKPSSDYK NSPGNIPSLD  420
SKNYEDGKKS WNDANSDDKK KLWDMPLWDD VDEAPGFPDV NKPKPSSDYK SRPGNIPSWD  480
SKNHVDGKKS WNSVQSGNNI DGITKKWDGP LWDEVDFGKA SGADGTSSAT DDKIRKFDGP  540
GFNDMASKKN EYILPQWTTA TKGTDLESHA MDGQTQHVMS QPLSSQYVNA TVAMIPEVPI  600
GSSHLKHQIQ EHSNQQMLTS GNDSIQNVHD IYLTGTRNPF SGSNIQSNGQ VQGTFVHMDS  660
HKQTENGQAR SKNDVNALPA SLPELSLQGQ LPQLYTDLNL TGAIDFLKSL PKSACNEDTR  720
VNEEQNTATA MDVKASVPIG ILSGSITQEK EPVGNLEGTG NKVVENDKQQ EETMNLHNTE  780
TQGKEEEGDV GNEEKAMRQF KVALVEFAKE ILKPKWKEGK LSRDVHKTVV KKVVDKVTST  840
IQGNQIPRTQ AKIEQYLTYS KPKITKLVEA YVERLLKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RSRSRSRNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	5e-12	C3H family protein