PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003741.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C3H

Protein Properties

Length: 309aa MW: 33590.9 Da PI: 8.1485

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003741.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.8	4.9e-10	216	241	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C + d+C++aHg Cse_sc003741.1_g020.1 216 WKTKICNQWETTGHCVFADKCNYAHG 241 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MIQHPFNGGN NNNGQGEFIP HLNGSNSQID NPNGRVNSVT QKSTPLSFAG QRPNRSSVPM 60 SRGTTHIFYK TRLCQQFVDG TCPKAADGCN YAHGPNDLRS PPLNWQENVN NNRGGGRNGN 120 GNWNEDRGRI GQKGICWRFS NGEECPYGDN CSYTHDATTF NVGGAMDSGR PRESSVINIK 180 TAVDQGQSQT VGRAVQVRTA SSDQDVLRSS VKGTYWKTKI CNQWETTGHC VFADKCNYAH 240 GLAELNTPIR RVEGDGSVAA NGVQIAMATD SAAAAPVKQG KWFEKLAGKL AGGKLKSIYG 300 DWIDDEDYE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	9e-44	C3H family protein