PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003718.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family FAR1
Protein Properties Length: 378aa    MW: 44391.6 Da    PI: 9.3378
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003718.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR128.55e-095494790
                   FAR1 47 ktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                           ++e++ rt++ +rtgC a++k k+++ + k+e++++e++HnH++ 
  Cse_sc003718.1_g010.1  5 TSETQIRTSSISRTGCMARVKFKLNSdHTKYELYDFEENHNHTFI 49
                           346788999*****************99**************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    
MSEETSETQI RTSSISRTGC MARVKFKLNS DHTKYELYDF EENHNHTFIP VVYRNLSKKR  60
KKMSHKQQIY MQQLGGTNIG ATRAHHLYAA TNGGYDSVDA TETEFRNNKR DLNSHIGDSD  120
AQMLITKMEN RKKHVANLSF EYAVEDSELT ALFWADEMAK YNYKEFGDTI SFDATFRTNK  180
YKMVFVPFTG IDNHRKCVTF GAGMLSNETT KSYIWLLRCF LKAFSKQPRL VVTDQDPAMR  240
KAVATVFKES KHRLCMWHIT NKLPFKICKT ILDNGTFRRR LHRLVWSLYV DPEEFVEKWL  300
SLINEFNLQE NKWLSDMFEI RDRWIPAYFK DVELCGLMRT TSRSESENSF FSNFTTSGST  360
LLNFMMGFES AMERQRHK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-58FAR1 family protein