PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003680.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 415aa MW: 46097.1 Da PI: 6.564

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003680.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41	3.4e-13	229	286	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-.STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas....kapskK.lsKaeiLekAveYIksLq 55 ++hn+ Er+RRd+iN+++ +L++++P++ + + +Ka++L +++eY+k++q Cse_sc003680.1_g070.1 229 ANHNQSERKRRDKINQRMKTLQKMVPNSNkvscDMYLEIiTDKASMLDEVIEYVKQMQ 286 58***********************6669996666777**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MNQCVPSWDL EDINSNLDVF KLDYEVAELT WENGQVAKHE LGHRRVPSKS QPETSWDKPC 60 AGETLEAIVT QATHKPYCKT HVAVNDNELV PSAIMTSDAM VPSARDAGCS TRVGSCSGDP 120 SAFLDGRVAS GGGDGGCTTT VSCHDMTMSG CGTYETFDTC DDDTDGQRLI ETSMGSPEDT 180 SSGGDCLKSR SPDDSACHYR TKQEVNVVRE KKRGKPESST STKRRRTAAN HNQSERKRRD 240 KINQRMKTLQ KMVPNSNKVS CDMYLEIITD KASMLDEVIE YVKQMQAQVH MVNRMNMPPM 300 MMPLFMQQQQ QQQQLQMSMM NSMGLGMGMG MGFGGMDMNA MALSHLPTGF HPTTFMPMPW 360 NNHIIDRVVN NPMAGDPMSA FRVSRSQPMN MDAYSRMAAL YQHMQNQPSG SHPKN

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MNQCVPSWDL EDINSNLDVF KLDYEVAELT WENGQVAKHE LGHRRVPSKS QPETSWDKPC  60
AGETLEAIVT QATHKPYCKT HVAVNDNELV PSAIMTSDAM VPSARDAGCS TRVGSCSGDP  120
SAFLDGRVAS GGGDGGCTTT VSCHDMTMSG CGTYETFDTC DDDTDGQRLI ETSMGSPEDT  180
SSGGDCLKSR SPDDSACHYR TKQEVNVVRE KKRGKPESST STKRRRTAAN HNQSERKRRD  240
KINQRMKTLQ KMVPNSNKVS CDMYLEIITD KASMLDEVIE YVKQMQAQVH MVNRMNMPPM  300
MMPLFMQQQQ QQQQLQMSMM NSMGLGMGMG MGFGGMDMNA MALSHLPTGF HPTTFMPMPW  360
NNHIIDRVVN NPMAGDPMSA FRVSRSQPMN MDAYSRMAAL YQHMQNQPSG SHPKN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	211	226	KKRGKPESSTSTKRRR
2	223	238	KKRGKPESSTSTKRRR
3	224	239	KKRGKPESSTSTKRRR
4	235	240	ERKRRD
5	236	241	RKRRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	5e-61	bHLH family protein