PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003652.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family MYB
Protein Properties Length: 296aa    MW: 32914.8 Da    PI: 8.2663
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003652.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-172774148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+llvd++++ G gtW++ ++  g++R++k+c++rw +yl
  Cse_sc003652.1_g060.1 27 KGAWTPEEDKLLVDYITKNGHGTWRSFPKLAGLRRCGKSCRLRWANYL 74
                           79********************************************97 PP
2Myb_DNA-binding52.89.1e-1780125148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg+++ eE++ + +++ +lG++ W++Ia++++ gRt++++k++w+++l
  Cse_sc003652.1_g060.1  80 RGAFSSEEEQTIFQLHSLLGNK-WASIASRLP-GRTDNEIKNYWNSHL 125
                            89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MRKRGRKKEK GEKMGRMPCC EKGEVKKGAW TPEEDKLLVD YITKNGHGTW RSFPKLAGLR  60
RCGKSCRLRW ANYLRPDIKR GAFSSEEEQT IFQLHSLLGN KWASIASRLP GRTDNEIKNY  120
WNSHLRKRAP NKIPNLQANS ASEPTDTKPK TLSTTHIAEG QNVRVEADAR MSIDPILLSP  180
STGAADCDYF LRAWNSEAGE SFQGAKNFNQ TIKVESDSVV TMQTEPTFTA SSTGASADQI  240
CKIEAEEATN CGSYSPNSSK AEKSSDITMD LLLDFPNDGE YLQYLQGDSN DNSAST
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.17e-84MYB family protein