PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003609.1_g040.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 449aa    MW: 50203.5 Da    PI: 5.9858
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003609.1_g040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS300.25.2e-92574462373
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn....sseelaalklfs 85 
                            ++lL++cA+a++s+d++l q++L+ l+++a +dgd++qRl+  f++AL ar a+  ++++k l++   +++     ++ ++  l  f+
  Cse_sc003609.1_g040.1  57 EQLLVRCANAIESNDATLSQQILWVLNNIAPSDGDSNQRLTCGFLRALVARAAK--TGTFKMLTAALCNSSItiqtHKFSIIELASFV 142
                            79****************************************************..555555544444433322115555555556** PP

                   GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAe 170
                            +++P+++f++ +aN aIlea+eg+++vHi+D+++++++Q p+L++a+a ++egpp l++T  g+ e +      ++ e+g +L +fA+
  Cse_sc003609.1_g040.1 143 DLTPWHRFGFTAANAAILEAIEGHSTVHIVDLSLTHCMQIPTLIDAMAGKSEGPPLLKLTIAGATEDVppmLDLSYDELGVKLVNFAR 230
                            *************************************************************9998877987888999*********** PP

                   GRAS 171 elgvpfefnvl.......vakrledleleeL..rvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvve 243
                            + ++ +ef+v+        a+ +e l+l++L   ++++Eal++n++++lh++++e+ +++       +r  +Lk+++sl+P++vv+++
  Cse_sc003609.1_g040.1 231 SRNIILEFTVIpssssdgFASLIEHLKLQRLvhGTETNEALIINCHMMLHYIPEETPTIPFsfedatPRALFLKQIRSLNPTLVVLAD 318
                            ***********88876666667777788888444555****************999887654555678999***************** PP

                   GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplse 331
                            ++ad +s+++ +r+ +a++y +  +d +++ lp+ s++r+++E+  + ++i+nv+a+eg++r+er e  ++W +r+++ GF+ v+++e
  Cse_sc003609.1_g040.1 319 EDADFTSTNLITRLRSAFNYLWIPYDIVDTFLPKGSKQRQWYEAD-ICWKIENVIAQEGSHRVERLEPRGRWVQRMRNTGFHGVAFGE 405
                            *********************************************.****************************************** PP

                   GRAS 332 kaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            ++++++k +l +++  g+ +++e++ lvl+Wk++++v+++aW
  Cse_sc003609.1_g040.1 406 DIVTEVKGMLDEHA-AGWGLKKEEDDLVLTWKGHNVVFATAW 446
                            **************.8999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MMQFTETLPA PPLHQSTKPC QNFTPMNPNQ LQRTRHWPEF PAPNKALGTF GDANCMEQLL  60
VRCANAIESN DATLSQQILW VLNNIAPSDG DSNQRLTCGF LRALVARAAK TGTFKMLTAA  120
LCNSSITIQT HKFSIIELAS FVDLTPWHRF GFTAANAAIL EAIEGHSTVH IVDLSLTHCM  180
QIPTLIDAMA GKSEGPPLLK LTIAGATEDV PPMLDLSYDE LGVKLVNFAR SRNIILEFTV  240
IPSSSSDGFA SLIEHLKLQR LVHGTETNEA LIINCHMMLH YIPEETPTIP FSFEDATPRA  300
LFLKQIRSLN PTLVVLADED ADFTSTNLIT RLRSAFNYLW IPYDIVDTFL PKGSKQRQWY  360
EADICWKIEN VIAQEGSHRV ERLEPRGRWV QRMRNTGFHG VAFGEDIVTE VKGMLDEHAA  420
GWGLKKEEDD LVLTWKGHNV VFATAWVPT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein