PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003546.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 1052aa MW: 116419 Da PI: 5.8556

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003546.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.8	1.9e-16	60	105	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd +l+++v+ G ++W+ I + ++ gR++k+c++rw + Cse_sc003546.1_g030.1 60 KGSWTPEEDAKLIQLVETQGARNWSVIGSSIP-GRSGKSCRLRWCNQ 105 799***************************.*********985 PP
2	Myb_DNA-binding	45.9	1.3e-14	114	156	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a+ +G++ W+ I++ ++ gRt++ +k++w++ Cse_sc003546.1_g030.1 114 PFTPHEDDVILRAHLIHGNK-WSVISKLLP-GRTDNAIKNHWNST 156 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1052 aa Download sequence
MSNNCFGGLI PQCFGNTTSS LIMMDLGKNR FQGTIPNVFH NFGELQGLIL NGNQLEGEKK 60 GSWTPEEDAK LIQLVETQGA RNWSVIGSSI PGRSGKSCRL RWCNQLSPNV QHRPFTPHED 120 DVILRAHLIH GNKWSVISKL LPGRTDNAIK NHWNSTLRRR GLTLTRSSES ESTQSDDDDG 180 LGKNKRRRCV SVSVSDVSSC DGMTLLTLLP PGDGEKKKGG GDEVEKGTME IDDTYLVDVM 240 RKMIAKEVRS YIDELRAKDG LSFGASEALL LFKHNLSSIN YTNDDLDYSC HDWLGSDYHP 300 IMMSWNTSTD CCNWNGVTCD YSTGDVIGLD VSCGMLKGTI LPTSSLFNLP HLQRLNLAFN 360 NFTGSQIPRE IGRFSKSITH LNLSNCGFSG QVPRDITLLD KLVSLGLSSY GFLENITSSL 420 VYQNPRGLKG KLPHYIFNLQ SLEILDLGGN SFTGDIPSEI SVNLTHLTFL DLSHNQLNGT 480 LPSWLFTSPS LVFLRLTDNM FSGNVPFESF DLPSLAVLGL SNNQLTGHTD MQIFRQLTNL 540 IDLGLAYNNF SGEWELDTLL SSLTNLEYLD LSHGGFSVTT KNTNHYINPG FVHLGLASCK 600 LKVIPYSFRD MKQLEGLDLS SNEIHGQIPH WAGEIGGNEL IYLNLSHNFI TGLPQFQWYG 660 LEQLYLQSNL IEGPFPPSIC NMSTLYYLDM SNNRFGRLIP QCFGNITSTL VMIDMRNNRF 720 QGTIPNVYGD CGYLEGLRLN GNQLRGEVPS SLSKCQRLTV LDLGNNHLNG TFPGWLEGLP 780 YLRALVLKSN NFHGHIQPSF AMKLPFPSLQ VLDLSHNGFV GQLPAKYFQS FNSMKNVVKS 840 STAPEYLDMG GGIYYSFVVT VKGVNQDFPQ ISVDYTIIDL SNNTFEGQIP SVIGGLNSLI 900 VLNLSHNCLS GPIPHALGNL TEIESLDLSW NQLSGEIPQS LARITTLEVL NLSQNHLVGR 960 IPEGPQFSTF GNSFGGNSGL YGSPLPKREH QSSPQVEDDG EYDDEEESGF TWKVVTLGYG 1020 CGTLVGLVMG YLMLSTRKIK WFNTIANAAE SL

Sequence ? help Back to Top

Protein Sequence Length: 1052 aa Download sequence

MSNNCFGGLI PQCFGNTTSS LIMMDLGKNR FQGTIPNVFH NFGELQGLIL NGNQLEGEKK  60
GSWTPEEDAK LIQLVETQGA RNWSVIGSSI PGRSGKSCRL RWCNQLSPNV QHRPFTPHED  120
DVILRAHLIH GNKWSVISKL LPGRTDNAIK NHWNSTLRRR GLTLTRSSES ESTQSDDDDG  180
LGKNKRRRCV SVSVSDVSSC DGMTLLTLLP PGDGEKKKGG GDEVEKGTME IDDTYLVDVM  240
RKMIAKEVRS YIDELRAKDG LSFGASEALL LFKHNLSSIN YTNDDLDYSC HDWLGSDYHP  300
IMMSWNTSTD CCNWNGVTCD YSTGDVIGLD VSCGMLKGTI LPTSSLFNLP HLQRLNLAFN  360
NFTGSQIPRE IGRFSKSITH LNLSNCGFSG QVPRDITLLD KLVSLGLSSY GFLENITSSL  420
VYQNPRGLKG KLPHYIFNLQ SLEILDLGGN SFTGDIPSEI SVNLTHLTFL DLSHNQLNGT  480
LPSWLFTSPS LVFLRLTDNM FSGNVPFESF DLPSLAVLGL SNNQLTGHTD MQIFRQLTNL  540
IDLGLAYNNF SGEWELDTLL SSLTNLEYLD LSHGGFSVTT KNTNHYINPG FVHLGLASCK  600
LKVIPYSFRD MKQLEGLDLS SNEIHGQIPH WAGEIGGNEL IYLNLSHNFI TGLPQFQWYG  660
LEQLYLQSNL IEGPFPPSIC NMSTLYYLDM SNNRFGRLIP QCFGNITSTL VMIDMRNNRF  720
QGTIPNVYGD CGYLEGLRLN GNQLRGEVPS SLSKCQRLTV LDLGNNHLNG TFPGWLEGLP  780
YLRALVLKSN NFHGHIQPSF AMKLPFPSLQ VLDLSHNGFV GQLPAKYFQS FNSMKNVVKS  840
STAPEYLDMG GGIYYSFVVT VKGVNQDFPQ ISVDYTIIDL SNNTFEGQIP SVIGGLNSLI  900
VLNLSHNCLS GPIPHALGNL TEIESLDLSW NQLSGEIPQS LARITTLEVL NLSQNHLVGR  960
IPEGPQFSTF GNSFGGNSGL YGSPLPKREH QSSPQVEDDG EYDDEEESGF TWKVVTLGYG  1020
CGTLVGLVMG YLMLSTRKIK WFNTIANAAE SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67300.1	5e-42	MYB family protein