PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc003530.1_g050.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | NF-YC | ||||||||
Protein Properties | Length: 147aa MW: 16504.7 Da PI: 9.7081 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 36.2 | 1.3e-11 | 53 | 133 | 19 | 99 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++P+ r+ +i+k+++ +i+ ea ++ ka e f+ +t ++ a +++ + ++++v + + fdfl d vp++ Cse_sc003530.1_g050.1 53 YNIPMQRVSRIIKSEDPNIRITQEALFVVNKASEKFLQLFTTEAYAAAFLDRKKQIDYKHLSSVVGKRKRFDFLADFVPEK 133 579**********9988889**********************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence |
MTKPKPKLTK TDDVTPTTTT TTSPHSNGTN SKPDDVITTD NNNNSVNGNS ILYNIPMQRV 60 SRIIKSEDPN IRITQEALFV VNKASEKFLQ LFTTEAYAAA FLDRKKQIDY KHLSSVVGKR 120 KRFDFLADFV PEKVKAEDAL KEVPTTD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 122 | RKKQIDYKHLSSVVGKRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 2e-27 | NF-YC family protein |