PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc003530.1_g040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 233aa MW: 26036.2 Da PI: 4.0884 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 61.4 | 1e-19 | 36 | 83 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.EEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.kly 47 k+ie k rqvtfskRr+g++KKA EL+ L++a+va+++ s+ g k+y Cse_sc003530.1_g040.1 36 KKIEKKDSRQVTFSKRRTGLFKKAAELCLLTGAKVAILVNSPGGgKVY 83 689**************************************9642666 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MVSSRSASFD GTIVNNTITT TINKKTSKGR QKIEIKKIEK KDSRQVTFSK RRTGLFKKAA 60 ELCLLTGAKV AILVNSPGGG KVYVFDEYDL IDRYLNDVVE TGRLGFPKFD QELVVEEEDE 120 MDIGKLEEYV SSLEEMKEDA LAEADALTMN GNIPALLDLD EMKKDEVTEA SDSVVIDNNE 180 AVLDSDLSLD MSWLDSDLLD MSWLDSVSFD SLLDIDETNT HDTFNLNFHG VEV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-15 | M-type_MADS family protein |