PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003388.1_g060.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 426aa    MW: 48690.8 Da    PI: 5.0049
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003388.1_g060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS195.33.9e-60943492249
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsev 87 
                            ++lLl+cA+a++++d + aq++++ l++ as++gdp+qRla+ f++AL +r +r +++ +++    ++    + + +++++l  ++++
  Cse_sc003388.1_g060.1  94 EKLLLHCANALENSDINSAQQVMWVLNNVASSSGDPNQRLASWFLRALISRASRVCPTPMNINGGMSSF---QRRLMSVTELagYVDL 178
                            689***************************************************777776655333222...333334444456**** PP

                   GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeel 172
                             P+++f++ + N+aI +a++g+ +vHi+Df+i++++QWp+L +aLa+RpegppslRi + +   ++    +  +ee+g rL++fA+  
  Cse_sc003388.1_g060.1 179 IPWHRFGFCASNSAIFKAIQGCPKVHILDFSITHCMQWPTLVDALAKRPEGPPSLRISVPSWRPYVppfLNVLTEEVGLRLTNFANFR 266
                            **********************************************************9988666688889999************** PP

                   GRAS 173 gvpfefnvl.....vakrledleleeLrvkp.....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                            +vpfefnv+     ++++ ++++++ L +++     +E+l++n++  + +++  + +l++  d++L+++ksl+P++v++v++++d++
  Cse_sc003388.1_g060.1 267 NVPFEFNVIevspsLEESSTNFNYDFLLTQTnlvqdDEVLVINCQSWMRYMP--DIALSK--DSFLEIIKSLNPRIVTIVDEDSDLG 349
                            *********766654455566677777555556667***************9..444544..77*******************9986 PP
2GRAS35.31.5e-11349419302373
                   GRAS 302 gaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                            g+er+er e+ +k ++r+++ GF +vp++e++ +++k ll +++  g+ ++ e++ +vl+Wk+++ v ++aW
  Cse_sc003388.1_g060.1 349 GRERIERLESGAKLSQRMRNLGFLSVPFGEDTISEVKFLLGEHA-SGWGMKTEEDMIVLTWKGHNSVYATAW 419
                            799*****************************************.77888999999**************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    
MTRYTLEEEW LKVLDNITLF DEVLNTYGDE IIEEYLWMRD KILNWLRRKP YYKLTLKEAN  60
KITTVDALFE HFLKQREKNG GAGCLGSLDG ACIEKLLLHC ANALENSDIN SAQQVMWVLN  120
NVASSSGDPN QRLASWFLRA LISRASRVCP TPMNINGGMS SFQRRLMSVT ELAGYVDLIP  180
WHRFGFCASN SAIFKAIQGC PKVHILDFSI THCMQWPTLV DALAKRPEGP PSLRISVPSW  240
RPYVPPFLNV LTEEVGLRLT NFANFRNVPF EFNVIEVSPS LEESSTNFNY DFLLTQTNLV  300
QDDEVLVINC QSWMRYMPDI ALSKDSFLEI IKSLNPRIVT IVDEDSDLGR ERIERLESGA  360
KLSQRMRNLG FLSVPFGEDT ISEVKFLLGE HASGWGMKTE EDMIVLTWKG HNSVYATAWF  420
PYGFEE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.14e-91GRAS family protein