PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003320.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 550aa MW: 62851.8 Da PI: 9.5341

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003320.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	60.9	3.8e-19	28	122	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.........tekerrtraetrtgCkaklkvkkekdgkwevtk 80 Y++YA ++GF vr+ ++++ g +++++f Cskeg+++ + k+ ++ +r r+e rt+Cka++ v ++ +k++v++ Cse_sc003320.1_g010.1 28 AYRDYAAKAGFIVRRGHQTND--GGIVINKEFLCSKEGTKKVKVKEfdslkdncdAKAVKRIRSEFRTNCKARIYVVRS-GEKYRVKN 112 59************98877..99****************9***988888999**********999.9*** PP FAR1 81 leleHnHela 90 +++eHnH ++ Cse_sc003320.1_g010.1 113 FVEEHNHGFF 122 *****986 PP

Sequence ? help Back to Top
Protein Sequence Length: 550 aa Download sequence
MLIKPVVVKT LVPVEGTLFD SVEVAYKAYR DYAAKAGFIV RRGHQTNDGG IVINKEFLCS 60 KEGTKKVKVK EFDSLKDNCD AKAVKRIRSE FRTNCKARIY VVRSGEKYRV KNFVEEHNHG 120 FFTAEDRHFQ NSHRSMSLAH QGYENVGATK IDFKNMSRDI YSYIGKYDAQ MIIDKFSILK 180 ERDENFTFEF KTNTDGQLSC LFWSDDTSKR NYEAFGDILS FDATYKTNMY NMVFVPFTGV 240 DNHKKCVIFA CGLLSKEHVV SYKWLLQAFL NTHIKEPYLV LTDQDPSMLI AIPDMFKTAK 300 HQLYQQRNNQ CVLDNNSRIN RPSLKTNHLV EQHAAQFYTL EAFYVVQAEI VASIESCTGS 360 MKNLGYVEYD EETRSVNCSC LHFERRGLLC RHAFYTLRGY GINKIPKQYL LRRWKKEAVV 420 LPLLGSSFKA NGSSGSCISK IYSKVNAIIN HCGYDEEKLG NKEDSISSMI GIPKPPAIDV 480 FPPDIGSNKG GVTGARYKPS NNDNCPNNPD RKVLTAKKDI KKTKRNGKKV KRKSNKANVE 540 HGTEEFNFKE

Sequence ? help Back to Top

Protein Sequence Length: 550 aa Download sequence

MLIKPVVVKT LVPVEGTLFD SVEVAYKAYR DYAAKAGFIV RRGHQTNDGG IVINKEFLCS  60
KEGTKKVKVK EFDSLKDNCD AKAVKRIRSE FRTNCKARIY VVRSGEKYRV KNFVEEHNHG  120
FFTAEDRHFQ NSHRSMSLAH QGYENVGATK IDFKNMSRDI YSYIGKYDAQ MIIDKFSILK  180
ERDENFTFEF KTNTDGQLSC LFWSDDTSKR NYEAFGDILS FDATYKTNMY NMVFVPFTGV  240
DNHKKCVIFA CGLLSKEHVV SYKWLLQAFL NTHIKEPYLV LTDQDPSMLI AIPDMFKTAK  300
HQLYQQRNNQ CVLDNNSRIN RPSLKTNHLV EQHAAQFYTL EAFYVVQAEI VASIESCTGS  360
MKNLGYVEYD EETRSVNCSC LHFERRGLLC RHAFYTLRGY GINKIPKQYL LRRWKKEAVV  420
LPLLGSSFKA NGSSGSCISK IYSKVNAIIN HCGYDEEKLG NKEDSISSMI GIPKPPAIDV  480
FPPDIGSNKG GVTGARYKPS NNDNCPNNPD RKVLTAKKDI KKTKRNGKKV KRKSNKANVE  540
HGTEEFNFKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-33	FAR1 family protein