PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003290.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 453aa MW: 51926.2 Da PI: 5.1524

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003290.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	69.3	7.5e-22	80	179	1	85
trihelix 1 rWtkqevlaLiearremeerlr.rgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 +W+++ v++Li++++ ++++ + + + +kk++W+ vsk m ++g+e+sp+qC++k+++lnkryk+++++ +++ ++ Cse_sc003290.1_g010.1 80 KWSDSRVRLLIQVVSCVDDDDGgNVEgggggsgrrssclQKKGKWKTVSKMMVSKGCEVSPQQCEDKFNDLNKRYKRLNDILGRGvSC 167 7************444443312223345556667788********************************************889 PP trihelix 74 essstcpyfdql 85 +++++ ++ +++ Cse_sc003290.1_g010.1 168 RVVENPSLMESM 179 999999998887 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MNLMDRIDDE PIPSLGFMET KILKPNSSYL SFGNLRSDTN LNDHNMSDDD EPSFMEDGNN 60 ENLRRVKGRK GSLSQWQRMK WSDSRVRLLI QVVSCVDDDD GGNVEGGGGG SGRRSSCLQK 120 KGKWKTVSKM MVSKGCEVSP QQCEDKFNDL NKRYKRLNDI LGRGVSCRVV ENPSLMESMP 180 RLSAKMKEDV KKILSSKHLF YPEMCAYHNG QKIPNCESQC VSKVNANAIA NANHSSDDVE 240 NNDESDDDDD DDDMDHEDDD HENDGEGERG KGNNGFRDEM NEFFEDPNNS KMQKKEWVRE 300 RMLQIHEQRI RIETEAFEME KRRFKWQRFC DRKDRELEIS KLENERLMLE NERMTFQNNS 360 ANSLLKGEQI SYGYMPVAVA GVLVVAVGFT AYPVNTIGRG MQMTYAEVFS YEDSINALRH 420 ILKYEGAKSL YKGACANILL AELKSLLWAR RMV

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MNLMDRIDDE PIPSLGFMET KILKPNSSYL SFGNLRSDTN LNDHNMSDDD EPSFMEDGNN  60
ENLRRVKGRK GSLSQWQRMK WSDSRVRLLI QVVSCVDDDD GGNVEGGGGG SGRRSSCLQK  120
KGKWKTVSKM MVSKGCEVSP QQCEDKFNDL NKRYKRLNDI LGRGVSCRVV ENPSLMESMP  180
RLSAKMKEDV KKILSSKHLF YPEMCAYHNG QKIPNCESQC VSKVNANAIA NANHSSDDVE  240
NNDESDDDDD DDDMDHEDDD HENDGEGERG KGNNGFRDEM NEFFEDPNNS KMQKKEWVRE  300
RMLQIHEQRI RIETEAFEME KRRFKWQRFC DRKDRELEIS KLENERLMLE NERMTFQNNS  360
ANSLLKGEQI SYGYMPVAVA GVLVVAVGFT AYPVNTIGRG MQMTYAEVFS YEDSINALRH  420
ILKYEGAKSL YKGACANILL AELKSLLWAR RMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-57	Trihelix family protein