PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003273.1_g070.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB_related

Protein Properties

Length: 448aa MW: 48656.5 Da PI: 7.7965

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003273.1_g070.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.1	5.6e-10	201	248	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r++W+ eE+ l+ av+++G g+W+t r g Rt+ q+ rw++ Cse_sc003273.1_g070.1 201 RKPWSSEEEHELLAAVQRYGEGNWATMLR--GdfrSDRTASQLSQRWNTI 248 789*********************665..345689********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MQKDGGSISE DDVSIILQRY SPTTILALLQ EVAQVEDVKI DWNVLVKHTK TGITNPREYQ 60 MLWRHLAYCD PLLEKLEAGA EPVDGDSDLE YELEAFPTVS NEASAEAAAY VKVLMSSGRT 120 PSDSCIEKGV TMEAPLTLNI PRSNSTQHPS QNSPHVRSTS GVNISVPVYV PTQAIPTVSS 180 AEGLDNANVH SNNIYPPRRK RKPWSSEEEH ELLAAVQRYG EGNWATMLRG DFRSDRTASQ 240 LSQRWNTIKR RQNNPIIKTG SQPSEMQLAA RQAFNMAVDK PGLDIPKSAS PVGMTNPGNI 300 SAQPMETSYD STPTGPKRPF PRSQPFSTRP LPTGSDAVKA AAVAAGARIA TESDAAEIRR 360 QQLKVNAIHI RTPRPPPQHG THIGYSSISP KEPRPILGPA HANTKVGPVL KTHKSANSLN 420 PVKDDQVAVS GTPQRDVGAQ DNQVSGSD

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MQKDGGSISE DDVSIILQRY SPTTILALLQ EVAQVEDVKI DWNVLVKHTK TGITNPREYQ  60
MLWRHLAYCD PLLEKLEAGA EPVDGDSDLE YELEAFPTVS NEASAEAAAY VKVLMSSGRT  120
PSDSCIEKGV TMEAPLTLNI PRSNSTQHPS QNSPHVRSTS GVNISVPVYV PTQAIPTVSS  180
AEGLDNANVH SNNIYPPRRK RKPWSSEEEH ELLAAVQRYG EGNWATMLRG DFRSDRTASQ  240
LSQRWNTIKR RQNNPIIKTG SQPSEMQLAA RQAFNMAVDK PGLDIPKSAS PVGMTNPGNI  300
SAQPMETSYD STPTGPKRPF PRSQPFSTRP LPTGSDAVKA AAVAAGARIA TESDAAEIRR  360
QQLKVNAIHI RTPRPPPQHG THIGYSSISP KEPRPILGPA HANTKVGPVL KTHKSANSLN  420
PVKDDQVAVS GTPQRDVGAQ DNQVSGSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	203	PRRKRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	9e-75	MYB_related family protein