PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc003225.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family GRAS
Protein Properties Length: 474aa    MW: 52969.8 Da    PI: 6.3477
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc003225.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.12.4e-1361054742374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                            ++lL++cA+a++++d   a++l+++l+ ++s +gdp +Rl ay++e+L a+l++s+s++ykal+++e s     e ++++++++e++P
  Cse_sc003225.1_g030.1 105 KKLLIACAKAIAENDSITANWLMSELRPMVSVSGDPDHRLGAYMLEGLVAKLSSSGSSIYKALRCKEPS---GNELFSYMRILYEACP 189
                            689*****************************************************************9...999************* PP

                   GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvp 175
                            ++kf++l aN aI ea+++e+r+HiiDf+i qG+QW++L+qaLasRp+gpp+lRiTgv++++s   +   ++ +g+rL+ +A+++++p
  Cse_sc003225.1_g030.1 190 YFKFGYLSANGAIAEAMKNESRIHIIDFQIAQGGQWVTLIQALASRPGGPPKLRITGVDDSTSAyaRGGGVNIIGQRLTALAKSCNIP 277
                            ************************************************************998899999******************* PP

                   GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263
                            fef+  v    +++++ +L ++pgE laVn++++lh+++desv  e++rd++L+lvkslsPkvv++veqe++ n+++F++rf e+l+y
  Cse_sc003225.1_g030.1 278 FEFHG-VPVYATEVQIAHLGIRPGEPLAVNFAFMLHHMPDESVGPENHRDRLLRLVKSLSPKVVTLVEQESNVNTAPFFNRFQETLNY 364
                            *****.688999**************************************************************************** PP

                   GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                            ysa+f+s++++lpr++++ri+vE+++l+r+ivn++aceg er+erhe l+kWr+r+++aG+kp+pls+ +++++k+ll +++ + yr+
  Cse_sc003225.1_g030.1 365 YSAIFESIDVTLPRDHQDRISVEQHCLARDIVNIIACEGVERVERHELLGKWRSRFTMAGLKPYPLSSLVNSTIKSLLDTYSHK-YRL 451
                            **********************************************************************************77.*** PP

                   GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                            ee++g+l+lgW++r Lv+ +aW+
  Cse_sc003225.1_g030.1 452 EERDGALFLGWMNRDLVASCAWK 474
                            **********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    
MNRNLYSSPT ASISSNGSSV SQQDTHSYHP DTYHSPDYTY TSHVSNTGFA DNADDLEYRL  60
RELESAMMGT DQDYMESYDI SSSWGGVNQA TSDVMTEMIS RRDFKKLLIA CAKAIAENDS  120
ITANWLMSEL RPMVSVSGDP DHRLGAYMLE GLVAKLSSSG SSIYKALRCK EPSGNELFSY  180
MRILYEACPY FKFGYLSANG AIAEAMKNES RIHIIDFQIA QGGQWVTLIQ ALASRPGGPP  240
KLRITGVDDS TSAYARGGGV NIIGQRLTAL AKSCNIPFEF HGVPVYATEV QIAHLGIRPG  300
EPLAVNFAFM LHHMPDESVG PENHRDRLLR LVKSLSPKVV TLVEQESNVN TAPFFNRFQE  360
TLNYYSAIFE SIDVTLPRDH QDRISVEQHC LARDIVNIIA CEGVERVERH ELLGKWRSRF  420
TMAGLKPYPL SSLVNSTIKS LLDTYSHKYR LEERDGALFL GWMNRDLVAS CAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein