PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003161.1_g020.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 636aa MW: 71717.6 Da PI: 7.8918

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003161.1_g020.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.5	7.1e-16	130	223	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 Y +YA+++GF vrks +k+ r+g ++++ +vC++eg ++ + + ++k++r+ + + tgCka+++ ++ + k+++t + + Cse_sc003161.1_g020.1 130 YMKYASKAGFVVRKSCQKRL-RSGIVKQKYLVCNREGCPKGIHVDtldlenSDKQKRSLNLHITGCKARVMFELIPgSTKYKLTVFYS 216 99**********998887.8898*********999888889998888888999999**********9******* PP FAR1 84 eHnHela 90 HnHel Cse_sc003161.1_g020.1 217 IHNHELE 223 ***96 PP

Sequence ? help Back to Top
Protein Sequence Length: 636 aa Download sequence
MDSIPNYSVS SDPSSSITES ATESDRSSSD PSSSITESIV VSVTESASED VVVSDDVSAK 60 YTEEIVAYEH GDESAAIKKL NALKTPESFS THSNIDTPGG TVYYIPKVPV DVLLAKGNVF 120 NSVDECISAY MKYASKAGFV VRKSCQKRLR SGIVKQKYLV CNREGCPKGI HVDTLDLENS 180 DKQKRSLNLH ITGCKARVMF ELIPGSTKYK LTVFYSIHNH ELERKEYKHL SKTERQLTYA 240 EQLFIVKASS VNIGATRAHH LLTGLKGSYL LVHGTTVDFK NFFRSVNCYI GDSDAQMLIA 300 KMENRQKHVP DFSFDYLVEN AELSAIFWAH EVSKYNYKEF CDVVSFDATY RTNKYKMMFV 360 PFTAIDNHRN LFEGSEVSVI KEKKFVDEVM EKKKAKKKEK FKKKGDDNDK NEEEEEPINL 420 FHREDGLYKV LRNIEDGSVV CSCQLFVRVG ILCRHIFCVF KNANVEMIPN QYILRRWTKN 480 LIPAGLRNKR NRYGEKNEIV ENYANEATSI VDHCVHMLSE DETRLAAFIE KLKLLKLDVE 540 ADCPNPPSKD KLDNLEELVG VPKPPVVAVK NPSGCKPKGR EKSRIKGGKE QAIDESSVNR 600 NACSICGAKD GHNKRTCPNK YRVQDDLGIG LHGVDI

Sequence ? help Back to Top

Protein Sequence Length: 636 aa Download sequence

MDSIPNYSVS SDPSSSITES ATESDRSSSD PSSSITESIV VSVTESASED VVVSDDVSAK  60
YTEEIVAYEH GDESAAIKKL NALKTPESFS THSNIDTPGG TVYYIPKVPV DVLLAKGNVF  120
NSVDECISAY MKYASKAGFV VRKSCQKRLR SGIVKQKYLV CNREGCPKGI HVDTLDLENS  180
DKQKRSLNLH ITGCKARVMF ELIPGSTKYK LTVFYSIHNH ELERKEYKHL SKTERQLTYA  240
EQLFIVKASS VNIGATRAHH LLTGLKGSYL LVHGTTVDFK NFFRSVNCYI GDSDAQMLIA  300
KMENRQKHVP DFSFDYLVEN AELSAIFWAH EVSKYNYKEF CDVVSFDATY RTNKYKMMFV  360
PFTAIDNHRN LFEGSEVSVI KEKKFVDEVM EKKKAKKKEK FKKKGDDNDK NEEEEEPINL  420
FHREDGLYKV LRNIEDGSVV CSCQLFVRVG ILCRHIFCVF KNANVEMIPN QYILRRWTKN  480
LIPAGLRNKR NRYGEKNEIV ENYANEATSI VDHCVHMLSE DETRLAAFIE KLKLLKLDVE  540
ADCPNPPSKD KLDNLEELVG VPKPPVVAVK NPSGCKPKGR EKSRIKGGKE QAIDESSVNR  600
NACSICGAKD GHNKRTCPNK YRVQDDLGIG LHGVDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-21	FAR1 family protein