PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc003060.1_g120.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Nin-like

Protein Properties

Length: 561aa MW: 63501 Da PI: 5.472

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc003060.1_g120.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	50.6	3.7e-16	467	511	2	46
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 e++i +++++k+F +p+ +AA +L v+ ++LKriCR++GI+RWP+ Cse_sc003060.1_g120.1 467 ESSIPFDEVEKHFGKPMDEAAFNLHVSRSTLKRICRNLGIARWPY 511 67899***************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 561 aa Download sequence
MEKHVSFNLP VENSSKSGSS NSDVLASMKS RYPCIYQPMN PSNATLEEEE EDVDDAEDRR 60 YLTSLWVFGT RDIDEPESPL PPSFSNMMVE QNILDAHMIK EKITSALKGL RFREKGVLVQ 120 FWSPVPVRKR WLLTTWDQPF GVSVADEELY SYRLKSELRA IVVDGEDNEV LGPVGRVYSK 180 KSPEWSTECK IYGYIDLPVF EPSGNSCVGV LEIITSSNYV DYAFEVHEVS KALKISDERR 240 LHEMDGIFKA LKTVCDNHDL PLAQTWALSE YGGFVAKSGH LEQTCSSFKK SCIGRECMST 300 DDLPFYVRDL RVWDFHKACR ETHLGKSQGV VGRSFSSCGS WFCRDVTELE EDDYPLVPIA 360 RMTRSADEAD LQRLMKTVKE QIENNSCMQL DTMLAPQVIG GAPFKWNLEP SPLPIILSSE 420 KKEDMENEPS NSVAAGKSQS VIHSLEKGVG ELDINPGKKR RKRKRSESSI PFDEVEKHFG 480 KPMDEAAFNL HVSRSTLKRI CRNLGIARWP YKIPDKTDSV IKLDQADKTH DLVSLTENGK 540 DSPLRKKLSS ETIIANKVEY V

Sequence ? help Back to Top

Protein Sequence Length: 561 aa Download sequence

MEKHVSFNLP VENSSKSGSS NSDVLASMKS RYPCIYQPMN PSNATLEEEE EDVDDAEDRR  60
YLTSLWVFGT RDIDEPESPL PPSFSNMMVE QNILDAHMIK EKITSALKGL RFREKGVLVQ  120
FWSPVPVRKR WLLTTWDQPF GVSVADEELY SYRLKSELRA IVVDGEDNEV LGPVGRVYSK  180
KSPEWSTECK IYGYIDLPVF EPSGNSCVGV LEIITSSNYV DYAFEVHEVS KALKISDERR  240
LHEMDGIFKA LKTVCDNHDL PLAQTWALSE YGGFVAKSGH LEQTCSSFKK SCIGRECMST  300
DDLPFYVRDL RVWDFHKACR ETHLGKSQGV VGRSFSSCGS WFCRDVTELE EDDYPLVPIA  360
RMTRSADEAD LQRLMKTVKE QIENNSCMQL DTMLAPQVIG GAPFKWNLEP SPLPIILSSE  420
KKEDMENEPS NSVAAGKSQS VIHSLEKGVG ELDINPGKKR RKRKRSESSI PFDEVEKHFG  480
KPMDEAAFNL HVSRSTLKRI CRNLGIARWP YKIPDKTDSV IKLDQADKTH DLVSLTENGK  540
DSPLRKKLSS ETIIANKVEY V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	458	462	KKRRK
2	458	464	KKRRKRK
3	459	465	KKRRKRK
4	460	465	RRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	7e-68	Nin-like family protein