PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002940.1_g060.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

AP2

Protein Properties

Length: 443aa MW: 49674.2 Da PI: 7.8438

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002940.1_g060.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.5	1.2e-16	136	185	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+ +lg f+ta Aa+a+++a+ k++g Cse_sc002940.1_g060.1 136 SQYRGVTFYRRTGRWESHIWD------CgKQLYLGGFDTAHAAARAYDRAAIKFRG 185 78*****************......55**********************997 PP
2	AP2	41.4	3.5e-13	228	278	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+ + eAa+a+++a+ k +g Cse_sc002940.1_g060.1 228 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDNEIEAARAYDKAAIKCNG 278 89******.7**5553..2.26******99********99776 PP

Sequence ? help Back to Top
Protein Sequence Length: 443 aa Download sequence
MLDLNLSVDE SDFISESMEE DNGGISNSSA FNMETLSSAG DEHGSYPCSN LVYSFDILKN 60 NNLDGKSDTV ARNQLFPSSD VGEGGLVQGH MPDNRRGGRV YDRLYVLQQE HQQQQQKQQH 120 MQHMRKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ LYLGGFDTAH AAARAYDRAA 180 IKFRGVNADI NFTISDYEED LKQIQNLTKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR 240 WEARMGQFLG KKYIYLGLFD NEIEAARAYD KAAIKCNGRD AVTNFEPSLY EGELNNGENN 300 QFIDLNLGIA PPAFKIKDNA ILGNLHEINY ILGDMSSHAA RTRIGQHPTM TFGTKMQHLQ 360 PTHHGGIPSG FYPVYEGTAL DKRMANKCPS YWETSGPCGG ATSTPLLYAA ASSGFCNSSS 420 TVAAHTPHYN YNVTTIPPYY CRS

Sequence ? help Back to Top

Protein Sequence Length: 443 aa Download sequence

MLDLNLSVDE SDFISESMEE DNGGISNSSA FNMETLSSAG DEHGSYPCSN LVYSFDILKN  60
NNLDGKSDTV ARNQLFPSSD VGEGGLVQGH MPDNRRGGRV YDRLYVLQQE HQQQQQKQQH  120
MQHMRKSRRG PRSRSSQYRG VTFYRRTGRW ESHIWDCGKQ LYLGGFDTAH AAARAYDRAA  180
IKFRGVNADI NFTISDYEED LKQIQNLTKE EFVHILRRQS TGFSRGSSKY RGVTLHKCGR  240
WEARMGQFLG KKYIYLGLFD NEIEAARAYD KAAIKCNGRD AVTNFEPSLY EGELNNGENN  300
QFIDLNLGIA PPAFKIKDNA ILGNLHEINY ILGDMSSHAA RTRIGQHPTM TFGTKMQHLQ  360
PTHHGGIPSG FYPVYEGTAL DKRMANKCPS YWETSGPCGG ATSTPLLYAA ASSGFCNSSS  420
TVAAHTPHYN YNVTTIPPYY CRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.3	8e-92	AP2 family protein