PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc002933.1_g050.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family ARF
Protein Properties Length: 787aa    MW: 88514.2 Da    PI: 6.425
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc002933.1_g050.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.7e-23136237199
                            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                            f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F
  Cse_sc002933.1_g050.1 136 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHGSEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIF 222
                            99*****************************7333.34459*********************************************** PP

                            EE-SSSEE..EEEEE-S CS
                     B3  83 kldgrsefelvvkvfrk 99 
                               + +++el+v+v+r+
  Cse_sc002933.1_g050.1 223 L--RGENGELRVGVRRA 237
                            *..449999*****996 PP
2Auxin_resp117.41.2e-38262344183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            a+ha++t+++F+v+Y+Pr+s++eF+v+++++++++k+++s+GmRf m+fe+e+++e+r++Gtvvg+++ dp rWp+SkWr+Lk
  Cse_sc002933.1_g050.1 262 AWHAIQTGTMFTVYYKPRTSPAEFIVPYDQYMESIKSNYSIGMRFNMRFEGEEAPEQRFTGTVVGIEERDPKRWPESKWRCLK 344
                            89*******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 787 aa     Download sequence    
MTSSSCFSDR NDAPPPLSGE SNKGDADVAL YKDLWRACAG PLVTVPRENE LVFYFPQGHI  60
EQVEASTNQV ADQQMPIYNL PTKILCRVVN VQLKAEPDTD EVFAQITLMP EPNQNETEVT  120
KDPLPPPEAQ FRVHSFCKTL TASDTSTHGG FSVLRRHADE CLPPLDMSRQ PPTQELVAKD  180
LHGSEWRFRH IFRGQPRRHL LQSGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRAMRQ  240
QANIPSSVIS SHSMHLGVLA TAWHAIQTGT MFTVYYKPRT SPAEFIVPYD QYMESIKSNY  300
SIGMRFNMRF EGEEAPEQRF TGTVVGIEER DPKRWPESKW RCLKVRWDET SSIPRPERVS  360
PWKIEPALVP PAINTLPVHR QKRPRTNLLP SSPDSSVLTK EGSSKLATAD PHSLPASAFS  420
RVLQGQELST LRGNFIDNNE SDSCDRPIKW TPSVTDDEKV DALSVSRRYG SDKSLPVNRT  480
AESSFTDLLS GFGSTNGSIN EFSSPTSGHT NSWSVPPSNL SLSLLSGGGV KSGLQSNEIS  540
YQMRDVRYSA FDEYSAHSNQ RGGNQQHEKW MMPPPLPSYL QTPVVKQNEV MKPKDGDLKI  600
FGVTFAGNRN EGLQSQQYLT FDSDLKPEQS KRLKVADNLA TGKEQDKEYQ IFKPLARNAQ  660
VKVQGVSTRS CTKVHKQGIA LGRSVDLTKF NNYDELIFEL DELFEFNGEL KSRNKNWLVV  720
YTDDEGDMML VGDDPWQEFC GMVRKIFIYT REEVQRMNPG TLSSRDDDNS SVAEGVDEKD  780
SRKNENA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0ARF family protein