PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002695.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 519aa MW: 57934.5 Da PI: 8.3027

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002695.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.6	1.3e-15	109	237	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.......................................te 49 +fY++Y+k+ GF+++ ++++ + ++ + f C++ gk++++ + ++ Cse_sc002695.1_g040.1 109 NFYRHYSKMGGFDIKLGTESNPDGSDCPSIKYFSCNRGGKKRDSMYDrhrsdsdvavrgrvngkvvdeaidnkgkgidlslvgdsfAK 196 6*****************9999999999********9998899********************************999 PP FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+ r++++ +tgC a+l+v+k + +ev+ +++eHnH+l+ Cse_sc002695.1_g040.1 197 KKFRKNTSCKTGCLAQLRVRKVDGVMYEVNVFVEEHNHPLV 237 999**********************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence
MKGLVGLGTI SSLNNVGESS SCSYVCGSSS SSGSDGVRTS SSGSVSDDSS SRLVSASSSS 60 SVVNVSNVGD RSIGVSLVID GSRVWVPDVD ISLKPTKGTV FVSLVQAYNF YRHYSKMGGF 120 DIKLGTESNP DGSDCPSIKY FSCNRGGKKR DSMYDRHRSD SDVAVRGRVN GKVVDEAIDN 180 KGKGIDLSLV GDSFAKKKFR KNTSCKTGCL AQLRVRKVDG VMYEVNVFVE EHNHPLVSKE 240 DMQFLMSSRD MGCSKQHFFM QVSNSNVGPV RAFRLMKEIY GGFENIGATV VDCKNFKRDG 300 STFIGDRDAQ MVVEKFENLE KHCEGFFVDY YKSDGDSLSA LFWADSCAKM NYRRFGDVKS 360 FDATFRSNKY RMVFVPFTGI DNHNRSVTFG AGLVADETIA SYKWLLRDFK KAFLTDPQVV 420 VTDQDPSMKQ AISDVFPNAC HRLCMWHIMQ KLSVKVGSSV CNNTDFRKRL CAVVWNDQIS 480 LSIFYEEWKS IIDEFGLSEN KWLSDIYDMR YRWIPAFFA

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence

MKGLVGLGTI SSLNNVGESS SCSYVCGSSS SSGSDGVRTS SSGSVSDDSS SRLVSASSSS  60
SVVNVSNVGD RSIGVSLVID GSRVWVPDVD ISLKPTKGTV FVSLVQAYNF YRHYSKMGGF  120
DIKLGTESNP DGSDCPSIKY FSCNRGGKKR DSMYDRHRSD SDVAVRGRVN GKVVDEAIDN  180
KGKGIDLSLV GDSFAKKKFR KNTSCKTGCL AQLRVRKVDG VMYEVNVFVE EHNHPLVSKE  240
DMQFLMSSRD MGCSKQHFFM QVSNSNVGPV RAFRLMKEIY GGFENIGATV VDCKNFKRDG  300
STFIGDRDAQ MVVEKFENLE KHCEGFFVDY YKSDGDSLSA LFWADSCAKM NYRRFGDVKS  360
FDATFRSNKY RMVFVPFTGI DNHNRSVTFG AGLVADETIA SYKWLLRDFK KAFLTDPQVV  420
VTDQDPSMKQ AISDVFPNAC HRLCMWHIMQ KLSVKVGSSV CNNTDFRKRL CAVVWNDQIS  480
LSIFYEEWKS IIDEFGLSEN KWLSDIYDMR YRWIPAFFA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-58	FAR1 family protein