PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002625.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 319aa MW: 36202.6 Da PI: 6.5146

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002625.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	6	50	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W++eEd+ l +++ ++G++ W++I++ ++ gR++ +c srw+++l Cse_sc002625.1_g050.1 6 GLWSPEEDKMLDNLIGKHGSN-WSLISKFIP-GRSGQSCLSRWLSLL 50 56***************99.*****.*********9875 PP
2	Myb_DNA-binding	41.1	4.1e-13	61	102	4	47
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W++ Ed+ l++++ ++G + W++I++ + gR++k c srw+++ Cse_sc002625.1_g050.1 61 WSPKEDKMLINLFSKHGRN-WSLISKSIL-GRSAKTCESRWLSL 102 ***************66.****9.*********976 PP
3	Myb_DNA-binding	47.1	5.4e-15	105	147	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde l + v+++G + W++I++ ++ gR++k c srw+++ Cse_sc002625.1_g050.1 105 SFTPEEDEMLQNFVEKHGRN-WSLISKSIP-GRSAKTCESRWLSL 147 69**************66.*****.*********976 PP
4	Myb_DNA-binding	39.6	1.2e-12	150	190	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++T+ Ede l ++v+++G + W++I++ ++ R+++ c srw+ Cse_sc002625.1_g050.1 150 SFTPKEDEMLQNLVEKHGLN-WSLISKSIP-DRSANTCESRWL 190 69**************99.*****.*********7 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MDQIEGLWSP EEDKMLDNLI GKHGSNWSLI SKFIPGRSGQ SCLSRWLSLL QKEMEQIKRL 60 WSPKEDKMLI NLFSKHGRNW SLISKSILGR SAKTCESRWL SLQSSFTPEE DEMLQNFVEK 120 HGRNWSLISK SIPGRSAKTC ESRWLSLQRS FTPKEDEMLQ NLVEKHGLNW SLISKSIPDR 180 SANTCESRWL FFHKPLFMPQ EDEANEDITI RDDNIFIQPS SLNDINRGVN DQPPYIGDMA 240 MEIGSKNSIH EGNSSHEVGG MVSGQAPSIS DMARGNMSSG GTHSYSHDHS APSWNALYKR 300 DSSPMRIGND NAQEFVGDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	5e-23	MYB family protein