PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002485.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

Trihelix

Protein Properties

Length: 420aa MW: 48030.9 Da PI: 8.1336

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002485.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.3	5.7e-25	81	162	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e++ Li +rre+++ ++++k++k+lWe++s+kmr++gf rsp++C++kw+nl k++kk+k +++ s++s ++ y+++le Cse_sc002485.1_g050.1 81 WVQEETRILISLRREVDRFFNTSKSNKHLWEQISSKMRDKGFDRSPTMCTDKWRNLLKEFKKVKCKSGS--SGNS-KMLYYKDLE 162 **************************************************************99998..4555.7999998 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MYLSSSDKQK QEQQPCPPID FYKEPTDRTP MLIQPDQHHH HHHHQQQQQL MIMSENTPQN 60 TNTSSGSDHD TRAPKKRAET WVQEETRILI SLRREVDRFF NTSKSNKHLW EQISSKMRDK 120 GFDRSPTMCT DKWRNLLKEF KKVKCKSGSS GNSKMLYYKD LEELIRDRSK NGGTGNAYKA 180 SPPVSSKLDS FIQFSDKGRL EDASIPFGPI EGKLISFELK LTANYVKQNY ANGRSTVNLE 240 RPLDNDGDPL VITTAEAVAA SGVPPWNWRE TPGNGAEGQS SYGRIITVKW GEYTRRIGVD 300 GNTKAIKDAI KSAFGIRSKR AFWLEDEDGI IRALDRTMPA GCYNLHLDEG VSIKICHYDE 360 SERIAVRTED KTFYTEEDLH EFLNQRGLSG LREINGYRCF NNVDDLRLGA VYQMVRILGD

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MYLSSSDKQK QEQQPCPPID FYKEPTDRTP MLIQPDQHHH HHHHQQQQQL MIMSENTPQN  60
TNTSSGSDHD TRAPKKRAET WVQEETRILI SLRREVDRFF NTSKSNKHLW EQISSKMRDK  120
GFDRSPTMCT DKWRNLLKEF KKVKCKSGSS GNSKMLYYKD LEELIRDRSK NGGTGNAYKA  180
SPPVSSKLDS FIQFSDKGRL EDASIPFGPI EGKLISFELK LTANYVKQNY ANGRSTVNLE  240
RPLDNDGDPL VITTAEAVAA SGVPPWNWRE TPGNGAEGQS SYGRIITVKW GEYTRRIGVD  300
GNTKAIKDAI KSAFGIRSKR AFWLEDEDGI IRALDRTMPA GCYNLHLDEG VSIKICHYDE  360
SERIAVRTED KTFYTEEDLH EFLNQRGLSG LREINGYRCF NNVDDLRLGA VYQMVRILGD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13450.1	1e-150	Trihelix family protein