PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002479.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

ZF-HD

Protein Properties

Length: 466aa MW: 54302.1 Da PI: 10.0206

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002479.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	29.9	1.3e-09	417	456	5	45
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaA 45 ++ eC kN+A ++ +a+DGC Ef p+ g++gt +al aA Cse_sc002479.1_g040.1 417 NFIECAKNQASDIHRQALDGCVEFWPD-GKKGTLEALLWAA 456 689*********************8.9999**99888 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MSKSTTFYGN VKEYVKAAIS SIMPFEVGSL TVRYLGVPLI SSRLYKGHCS SLIDNIKKRL 60 LNWKNKSLSF AGRLQLLKFV IGSIHVYWSS VFILPKFVAY EIDKLMRGFL WSHGELQRGS 120 AKVKWADVCC LNIEGGLGIK SLHTWNVALM SKHVWNIVSK KDSLWVKWVF AYRLRGRNGI 180 ERSFWDVPEL NDVCWGWKKI LQSRNFLRSH IVHRLGDGSC TSSWFDNWIF IGPLCNFISK 240 RDIYEAGMSL SCKNAWNDLS EVRNVVPWCK QIWFSQNIPR DSFIFWLAIK QRLNTQDRIS 300 KWQDIWDVLT RLENAPNDLY QVISYVGNRP VNKSVWSIIQ RLVIGSVVYY VWQERNLRCF 360 QGKNRSVEML CSLIKETVRL RMMSLSIRNY KQACDVARMW DFHLLQSNKK IRVTVSNFIE 420 CAKNQASDIH RQALDGCVEF WPDGKKGTLE ALLWAAYDIT ECQSKD

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MSKSTTFYGN VKEYVKAAIS SIMPFEVGSL TVRYLGVPLI SSRLYKGHCS SLIDNIKKRL  60
LNWKNKSLSF AGRLQLLKFV IGSIHVYWSS VFILPKFVAY EIDKLMRGFL WSHGELQRGS  120
AKVKWADVCC LNIEGGLGIK SLHTWNVALM SKHVWNIVSK KDSLWVKWVF AYRLRGRNGI  180
ERSFWDVPEL NDVCWGWKKI LQSRNFLRSH IVHRLGDGSC TSSWFDNWIF IGPLCNFISK  240
RDIYEAGMSL SCKNAWNDLS EVRNVVPWCK QIWFSQNIPR DSFIFWLAIK QRLNTQDRIS  300
KWQDIWDVLT RLENAPNDLY QVISYVGNRP VNKSVWSIIQ RLVIGSVVYY VWQERNLRCF  360
QGKNRSVEML CSLIKETVRL RMMSLSIRNY KQACDVARMW DFHLLQSNKK IRVTVSNFIE  420
CAKNQASDIH RQALDGCVEF WPDGKKGTLE ALLWAAYDIT ECQSKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	5e-07	ZF-HD family protein