PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002411.1_g030.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

bHLH

Protein Properties

Length: 398aa MW: 44655.6 Da PI: 10.2941

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002411.1_g030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.6	2.2e-13	222	265	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 h ++Er+RR+++N++f++Lr+l+P+ +Ka++L ++eYI+sL Cse_sc002411.1_g030.1 222 HVIAERKRREKLNERFQTLRSLIPPgT-------KDKASVLSNTMEYISSL 265 889********************55.......599**********99 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MGSENGEIEL GMTNNSSKIK NFEIGLKKLF SGDFPQGVLP QRLEQAWASS SSSSLRSLSM 60 DNSMENSPFL FNMLHSTPYM SEMFALTEPH MDQQAPNKKP QSTTILRSED PLRQAIEQIR 120 TSLSIPSREH EEAAMTRAFL AVISSTTSPT PSSSFPNQRQ PPRVASAFKR YGSSLGPIKQ 180 RAPNRQNLHK RSFSFFRKLS EARAQRDKMD QTTRPTSNQF LHVIAERKRR EKLNERFQTL 240 RSLIPPGTKD KASVLSNTME YISSLKSQVE ELNKRNQILE TGQHAGKEPP NEGSRRFSGT 300 GPVVGITDIG ESTSQSRLVD LEVNARGNVI LVDLAMSVLE FIKQTENVSV MSIDAGTRML 360 ETEAIKNPVI LRLRIQGSEW DKSSFLEAVR RLLDDLAQ

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MGSENGEIEL GMTNNSSKIK NFEIGLKKLF SGDFPQGVLP QRLEQAWASS SSSSLRSLSM  60
DNSMENSPFL FNMLHSTPYM SEMFALTEPH MDQQAPNKKP QSTTILRSED PLRQAIEQIR  120
TSLSIPSREH EEAAMTRAFL AVISSTTSPT PSSSFPNQRQ PPRVASAFKR YGSSLGPIKQ  180
RAPNRQNLHK RSFSFFRKLS EARAQRDKMD QTTRPTSNQF LHVIAERKRR EKLNERFQTL  240
RSLIPPGTKD KASVLSNTME YISSLKSQVE ELNKRNQILE TGQHAGKEPP NEGSRRFSGT  300
GPVVGITDIG ESTSQSRLVD LEVNARGNVI LVDLAMSVLE FIKQTENVSV MSIDAGTRML  360
ETEAIKNPVI LRLRIQGSEW DKSSFLEAVR RLLDDLAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	226	231	ERKRRE
2	227	232	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	1e-45	bHLH family protein