PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002390.1_g050.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

MYB

Protein Properties

Length: 321aa MW: 35114.1 Da PI: 9.2737

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002390.1_g050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.6	1.6e-19	13	58	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ede l ++v+++G+++W++I++ ++ gR++k+c++rw + Cse_sc002390.1_g050.1 13 KGPWSPDEDEMLTNLVEKHGPRNWSLISKSIP-GRSGKSCRLRWCNQ 58 79****************************.*********985 PP
2	Myb_DNA-binding	55	1.9e-17	67	109	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ Cse_sc002390.1_g050.1 67 AFTPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 109 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
MATVSKKDMD RIKGPWSPDE DEMLTNLVEK HGPRNWSLIS KSIPGRSGKS CRLRWCNQLS 60 PEVEHRAFTP EEDETILRAH ARFGNKWATI ARLLSGRTDN AIKNHWNSTL KRKCSSMTNE 120 EFNELQVQQP MLKRSVSAGS GVPISSPGYF HQFNNTPNSP TGSEISDSNI QGLTSSTHLF 180 TVVPPPPPVV KVNDPPTSLS LSLPGVDSAM TENSPPPPPP SPVTVAANVM PIRQVPVEMM 240 TAIPAAISTA MQELRVSKPP APEKPFVPFS NEFMSVMQEM IRKEVRKYMM EQRGGGGGNG 300 MCNGFNGGGP VVNRTGISKI D

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-86	MYB family protein