PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002380.1_g040.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

SBP

Protein Properties

Length: 395aa MW: 43857.8 Da PI: 8.368

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002380.1_g040.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	133.6	6.5e-42	93	169	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC+adls keyhrrhkvCevhsk++ vl++g++qrfCqqCsrfh+l+efDe+krsCr+rL++hn+rrrk+q+ Cse_sc002380.1_g040.1 93 CLVDGCNADLSGSKEYHRRHKVCEVHSKTALVLIHGQKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQP 169 9*************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MDWNMKIPSW DEFDQGTIPN IDSVSGSSSY NGGQQQGFKG NFSVDLKLGQ VIDSKNEFRD 60 CLNLKGTSKM ALSPSGSSKR ARAVNNGIQA AGCLVDGCNA DLSGSKEYHR RHKVCEVHSK 120 TALVLIHGQK QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPD TSRAASLFSG 180 HQGVTMLQFS SPHVYQTTTL SNPIWTDMVK SEEEPTYSIR HPIPTHKQNP FPESSSGTKK 240 ATPKQQQFSL FHDNSSGSGS HLKLNHQTSP PPKVCQQQLL SFEANSNSYD KLFCDGYSPP 300 GRIHPVVQSV QSDCALSLLS SSPSQTSCTA LSHVMHQPNS FSVTPTNPLD EGAGYGGLES 360 IMDHNGNNMI QMGLHQRHHA SRDNEVPQTL PFYWE

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MDWNMKIPSW DEFDQGTIPN IDSVSGSSSY NGGQQQGFKG NFSVDLKLGQ VIDSKNEFRD  60
CLNLKGTSKM ALSPSGSSKR ARAVNNGIQA AGCLVDGCNA DLSGSKEYHR RHKVCEVHSK  120
TALVLIHGQK QRFCQQCSRF HSLEEFDEGK RSCRKRLDGH NRRRRKPQPD TSRAASLFSG  180
HQGVTMLQFS SPHVYQTTTL SNPIWTDMVK SEEEPTYSIR HPIPTHKQNP FPESSSGTKK  240
ATPKQQQFSL FHDNSSGSGS HLKLNHQTSP PPKVCQQQLL SFEANSNSYD KLFCDGYSPP  300
GRIHPVVQSV QSDCALSLLS SSPSQTSCTA LSHVMHQPNS FSVTPTNPLD EGAGYGGLES  360
IMDHNGNNMI QMGLHQRHHA SRDNEVPQTL PFYWE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	167	KRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	5e-57	SBP family protein