PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc002292.1_g080.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 490aa MW: 56568 Da PI: 7.2583

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc002292.1_g080.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53.3	8.9e-17	86	189	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..............tekerrtraetrtgCkaklkvkkek.d 73 ++Y eY+++ F++rks+ k++ +++eit+r C++ gkr+++ + ++k++r+++++ ++C ak+ ++ + + Cse_sc002292.1_g080.1 86 DMYLEYSQKGRFNIRKSNVKRN-NKREITHRSILCNRAGKRRSKVEVntlkegeeedegdnKKKRKRRTVSKACNCPAKISLRAIRgT 172 58*************99998.7777***********9988899******97777888889999********999 PP FAR1 74 gkwevtkleleHnHela 90 + ++v++++++HnH+l+ Cse_sc002292.1_g080.1 173 AAYKVIDFVENHNHPLM 189 ***************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MVEITEQGSI QLGEGSSSRD LQVENTTITD QANLEEHSDQ SDIDIYEADP EFVPTPKGTP 60 YWAPDIPEDE KPKRGVMFDT FDLAYDMYLE YSQKGRFNIR KSNVKRNNKR EITHRSILCN 120 RAGKRRSKVE VNTLKEGEEE DEGDNKKKRK RRTVSKACNC PAKISLRAIR GTAAYKVIDF 180 VENHNHPLMN ENNMDLSRAR RQLQFGDYVF IHRASLSNVG PTKAHRLKVA LMGGELVSFF 240 WADETMKSNY VAFGDVVSFD ATFRTNKYHF VFVPFTGIDH HQKCVTFGAA LLCDETYESY 300 CWMLEAFLKV HIKQPPLALT DQDAALRKAV VKIFPQSHHR LCMWHITQKL PGKVLGDLEV 360 DSEFRKDFHK LIWNVYITPQ IFEQRWNDLI NRYNLHENKW LSDMYEIRDR WIPGYFSEVP 420 MCGLMKTTSR SESSNAFFQI FSHKGNTTLS PCPTPLPESH TREFNFTSQQ APFTGGENLD 480 TSLTLFPTLS

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MVEITEQGSI QLGEGSSSRD LQVENTTITD QANLEEHSDQ SDIDIYEADP EFVPTPKGTP  60
YWAPDIPEDE KPKRGVMFDT FDLAYDMYLE YSQKGRFNIR KSNVKRNNKR EITHRSILCN  120
RAGKRRSKVE VNTLKEGEEE DEGDNKKKRK RRTVSKACNC PAKISLRAIR GTAAYKVIDF  180
VENHNHPLMN ENNMDLSRAR RQLQFGDYVF IHRASLSNVG PTKAHRLKVA LMGGELVSFF  240
WADETMKSNY VAFGDVVSFD ATFRTNKYHF VFVPFTGIDH HQKCVTFGAA LLCDETYESY  300
CWMLEAFLKV HIKQPPLALT DQDAALRKAV VKIFPQSHHR LCMWHITQKL PGKVLGDLEV  360
DSEFRKDFHK LIWNVYITPQ IFEQRWNDLI NRYNLHENKW LSDMYEIRDR WIPGYFSEVP  420
MCGLMKTTSR SESSNAFFQI FSHKGNTTLS PCPTPLPESH TREFNFTSQQ APFTGGENLD  480
TSLTLFPTLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	104	110	VKRNNKR
2	146	152	KKKRKRR
3	147	152	KKRKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-42	FAR1 family protein