PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cse_sc002292.1_g060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
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Family | C3H | ||||||||
Protein Properties | Length: 446aa MW: 48185.1 Da PI: 6.9846 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 40 | 65 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++r+G C yG+rC+F+H++ Cse_sc002292.1_g060.1 40 DEADCIYYLRNGVCGYGSRCRFNHPR 65 6799********************96 PP | |||||||
2 | zf-CCCH | 29.5 | 1.3e-09 | 104 | 124 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++++rtG Ck+G++Ck++H++ Cse_sc002292.1_g060.1 104 QYYMRTGLCKFGSSCKYHHPR 124 59*****************96 PP | |||||||
3 | zf-CCCH | 35.4 | 1.8e-11 | 145 | 170 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ Cse_sc002292.1_g060.1 145 GEKECSYYVKTGQCKFGVTCKFHHPQ 170 7899********************97 PP | |||||||
4 | zf-CCCH | 34.1 | 4.6e-11 | 299 | 324 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++ +tG Ck+G++C+++H+ Cse_sc002292.1_g060.1 299 PGEPECQHYVKTGDCKFGSSCRYHHP 324 5799*********************9 PP | |||||||
5 | zf-CCCH | 34.7 | 3e-11 | 346 | 371 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +lC ++a++G Ck+G++CkF H++ Cse_sc002292.1_g060.1 346 GSPLCLHYAQNGVCKFGPSCKFDHPM 371 679*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence |
MSDPVTEWSD GIGLEEPLWK LGLGEDENEN ENEVYPERPD EADCIYYLRN GVCGYGSRCR 60 FNHPRDRAGS LVGAMRGSDG EYPERIGQPV CQYELYANYV TQLQYYMRTG LCKFGSSCKY 120 HHPRQGTGSS SPVALNVSGY PLRPGEKECS YYVKTGQCKF GVTCKFHHPQ PTSMVPSPAP 180 AVSVGQLSPL PSAVYQNLQS SVISSQPYGV LAGNWPVARP PVLPGSYLPG TYGPMLVPPG 240 MVPFPGWNPY QAPIHPAVSP NPQPILGGGS VYAMTQLSTS FPSYSLTNSQ KENVFPQRPG 300 EPECQHYVKT GDCKFGSSCR YHHPLDLIVP NTNFGLSPMG LPLRPGSPLC LHYAQNGVCK 360 FGPSCKFDHP MGTLSYSPSA SSLSDMPVVP YPVGSYVATL ALSSSSSELR PEHTTVGSSF 420 SKSMQISQST GSSNSTTHGG GDTHSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-134 | C3H family protein |