PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc002210.1_g030.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family NF-YA
Protein Properties Length: 325aa    MW: 35090.6 Da    PI: 9.4371
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc002210.1_g030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA94.61.2e-29163219158
              CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                            d p+YVNaKQy++I++RR +Rak+e  kk+ +ksrkpylh SRh hA+rRpRg+gGrF
  Cse_sc002210.1_g030.1 163 DGPIYVNAKQYHGIIRRRRSRAKAEMAKKV-SKSRKPYLHLSRHLHAKRRPRGCGGRF 219
                            57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MNSVYYKENG DGISSNQAGS LSCGSGPWWS GLVTHSTFDE SVGRMKGSNI GNCGEQLIAI  60
APKPSPCAMD HETAKGNMTH FNIFPGDSKS SPNGQKPMQF QTAFTMQSAP QEFGGHLELG  120
CGQPALICGK YPYGDQYYGV LSAAYGPQIA GRVMLPLNLS TDDGPIYVNA KQYHGIIRRR  180
RSRAKAEMAK KVSKSRKPYL HLSRHLHAKR RPRGCGGRFL NTKEMENAKM GNLNSKLSDH  240
QTGSQRSEVL QSDYEINGGR SYRSGSEVTS MFFMGDLNHI PVGNLSGMSI SDMMTPSGNA  300
INGFGMGNTW VAAAAGGESR CNLAV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.21e-50NF-YA family protein